A01p04220.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p04220.1_BnaDARv10-RA
Unique NameA01p04220.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:1953787..1956170 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size2241
Exons2
Cds size2241
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p04220.1_BnaDARv10A01p04220.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 1953787..1956170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340473.9766784-CDS-A01_BnaDARv10:1953786..19554641626340473.9766784-CDS-A01_BnaDARv10:1953786..1955464Brassica napusCDSA01_BnaDARv10 1953787..1955464 +
1626340473.9852498-CDS-A01_BnaDARv10:1955607..19561701626340473.9852498-CDS-A01_BnaDARv10:1955607..1956170Brassica napusCDSA01_BnaDARv10 1955608..1956170 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p04220.1_BnaDARv10_exon1A01p04220.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 1953787..1955464 +
A01p04220.1_BnaDARv10_exon2A01p04220.1_BnaDARv10_exon2Brassica napusexonA01_BnaDARv10 1955608..1956170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p04220.1_BnaDARv10-RAA01p04220.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 1953787..1956170 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p04220.1_BnaDARv10-RA ID=A01p04220.1_BnaDARv10-RA|Name=A01p04220.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2241bp|location=Sequence derived from alignment at A01_BnaDARv10:1953787..1956170+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTCAACCTAAGCAACCTCTTCTCATTATTCCTTCTCCACCTTCT
AGTCCCCACACAAGTCCAAGCTCTTAACGCTGATGGTGTTCTTCTGCTAT
CTTTCAAATACTCTATCCTCAGTGACCCTCTCTCCGTTCTACGCAACTGG
AACTATGACGATAAAACACCATGCTTGTGGACAGGTGTCACATGCACAGA
GCTTGGGAAGCCCAGAACACCAGACATGTTCAGAGTCACAAGCTTGGTAC
TTCCCAACAAACACCTTCTTGGCTCCATCGCTCCGGACTTGTTCTTCATT
CCGCATCTAAGGATCTTGGATCTATCCAGCAACTTCTTCAACGGGTCACT
CCCGGACTCGGTCTTCAATGCTACTGAGCTTAGTGTTATCTCCCTTGGAA
GCAACAATCTCTCTGGTGATTTGCCTACGAGTATCAGCAGTGACACAAAC
CTCCAGCTCTTGAACCTCTCAGCTAACGCATTTACAGGAAAAATACCGCT
CAGCCTCTCACTTCTGAAGAATTTAACGGCCGTTTCCTTGTCAAAGAACT
CCTTCTCAGGTGACATTCCAGGTGGTTTCGAAGCAGTAGAGGTTCTTGAC
CTCTCTTCAAACCTTCTGAACGGCTCTCTTCCTCAGAACTTGGGAGGGAG
AAGCCTGCATTACTTGAGCTTATCACACAACAAACTCTCCGGCGAGATTC
CTCCAGGGTTTGCAGCAAAGTTTCCAGGAAACGCTACAGTCGATCTCTCC
TTCAACAACCTAACAGGCCCAATCCCAACCTCCCTCTCTCTACTCAACCA
AAAGGCTGAGGCTTTCTCCAGTAATCCAGAGCTGTGTGGGAAGCCGTTGA
AGACCCTTTGTTCAATACCTTCCACTCTCTCAAACCCTCCAAACATACCT
GAAAACACTTCCCCGGCTATAGCTGTCAAGCCAAGAAGCTCAGCTCCTCC
AACAAACTCTTCAACAGAGTCACCAAACCAAACGGTGAAAAGCAAGCTGA
AGCCAAGCACCATCGCCGGAATCATTGTTGCGGACATAGTTGGTCTAGCT
ATCATAGGCCTCTTCGTGCTCTACGTTTACCAAGTCAGGAAACGAAGAAG
GTCCCCAGAGTCCACCACGTTCAGCCTCTTCACAATCTGCCTTGACAAAA
ACGAAGCCAAGAAATCAAAACCAAGCTTCGTCGTTGAGGTCAACGTCACT
GAATCACCAGACGCTAAAACGTCTTGCGGCTCGTGCATCAACGGAGGAAG
GTACGACGAGACGTCGACGTCAGAGAGCGACGTAGAGAACAACCAGCAAA
CGGTTCAGGCATTTGATCGAACAGATGGGGGGCGATTGAAACAGAACGCT
CAGACTAAACTAATCACAGTCGACGGAGAGACTCGTTTGGATTTGGACAC
GCTACTAAAGGCCTCAGCTTACGTATTGGGAACCAACGTGACTAGAATCG
TGTACAAGGCGGTTCTTGAAAACGGCACGGCGTTCGCGGTGCGGCGGATA
GAAACGGAGAGCTGTGCGACGACGAAAGTTAAGGACTTTGAGCGGGAGGT
TCGCGCTATAGCTAAGATTCGACACCCGAATCTCGTCAGGCTTCGTGGGT
TCTGCTGGGGAAACGACGAGAAGCTTCTCATCTCCGACTATGTTCCCAAT
GGCAGCCTCCTTGGCTCCTTCGCCGCAACAAAGACAAGCGCAAGCTCGTC
TACACCAACTATGCAACACCCACTTTCTTTCGAGGCGCGGCTCAAGATAG
CTAAAGGAATGGCGCGGGGACTATCTTACATCAACGAGAAGAAACACGTG
CACGGTAACATCAAGCCCAATAACATTCTCTTAAACTCTGAGAATGAGCC
CATCATCACCGATCTGGGCCTAGACCGTCTCATGACACCAACGTCGAGCT
CACCGTGCTACCAGCCACCGGAACGGTGTACAAGCGAGAAACCGAACCCT
AAGTGGGACGTTTATTCCTTCGGCGTCATTCTATTAGAACTTCTCACAGG
CAAAACCTTTTCGGTCGATCAGGATGTAGATCAGTGGTCAGAGTTACTAG
ACGGTTCTGAAGCGGAAGAGAAAGGCCGGTTCTTGAGGTTAGTCGACGGT
GCAATAAGAAGCGATGTGGCTCGGCATGAGGATGCTGCGATGGTGTGCTT
CAGGTTAGGGATTGAATGTGTCTCTTCCTTGCCTCAGAAGCGACCGTCAA
TGAAGGAAGTAGTGCAAGCGTTGGAGAAAGTGAGTGTTTAG
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protein sequence of A01p04220.1_BnaDARv10-RA

>A01p04220.1_BnaDARv10-PA ID=A01p04220.1_BnaDARv10-PA|Name=A01p04220.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=747bp
MTFNLSNLFSLFLLHLLVPTQVQALNADGVLLLSFKYSILSDPLSVLRNW
NYDDKTPCLWTGVTCTELGKPRTPDMFRVTSLVLPNKHLLGSIAPDLFFI
PHLRILDLSSNFFNGSLPDSVFNATELSVISLGSNNLSGDLPTSISSDTN
LQLLNLSANAFTGKIPLSLSLLKNLTAVSLSKNSFSGDIPGGFEAVEVLD
LSSNLLNGSLPQNLGGRSLHYLSLSHNKLSGEIPPGFAAKFPGNATVDLS
FNNLTGPIPTSLSLLNQKAEAFSSNPELCGKPLKTLCSIPSTLSNPPNIP
ENTSPAIAVKPRSSAPPTNSSTESPNQTVKSKLKPSTIAGIIVADIVGLA
IIGLFVLYVYQVRKRRRSPESTTFSLFTICLDKNEAKKSKPSFVVEVNVT
ESPDAKTSCGSCINGGRYDETSTSESDVENNQQTVQAFDRTDGGRLKQNA
QTKLITVDGETRLDLDTLLKASAYVLGTNVTRIVYKAVLENGTAFAVRRI
ETESCATTKVKDFEREVRAIAKIRHPNLVRLRGFCWGNDEKLLISDYVPN
GSLLGSFAATKTSASSSTPTMQHPLSFEARLKIAKGMARGLSYINEKKHV
HGNIKPNNILLNSENEPIITDLGLDRLMTPTSSSPCYQPPERCTSEKPNP
KWDVYSFGVILLELLTGKTFSVDQDVDQWSELLDGSEAEEKGRFLRLVDG
AIRSDVARHEDAAMVCFRLGIECVSSLPQKRPSMKEVVQALEKVSV.
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mRNA from alignment at A01_BnaDARv10:1953787..1956170+

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p04220.1_BnaDARv10-RA ID=A01p04220.1_BnaDARv10-RA|Name=A01p04220.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2384bp|location=Sequence derived from alignment at A01_BnaDARv10:1953787..1956170+ (Brassica napus)
ATGACTTTCAACCTAAGCAACCTCTTCTCATTATTCCTTCTCCACCTTCT AGTCCCCACACAAGTCCAAGCTCTTAACGCTGATGGTGTTCTTCTGCTAT CTTTCAAATACTCTATCCTCAGTGACCCTCTCTCCGTTCTACGCAACTGG AACTATGACGATAAAACACCATGCTTGTGGACAGGTGTCACATGCACAGA GCTTGGGAAGCCCAGAACACCAGACATGTTCAGAGTCACAAGCTTGGTAC TTCCCAACAAACACCTTCTTGGCTCCATCGCTCCGGACTTGTTCTTCATT CCGCATCTAAGGATCTTGGATCTATCCAGCAACTTCTTCAACGGGTCACT CCCGGACTCGGTCTTCAATGCTACTGAGCTTAGTGTTATCTCCCTTGGAA GCAACAATCTCTCTGGTGATTTGCCTACGAGTATCAGCAGTGACACAAAC CTCCAGCTCTTGAACCTCTCAGCTAACGCATTTACAGGAAAAATACCGCT CAGCCTCTCACTTCTGAAGAATTTAACGGCCGTTTCCTTGTCAAAGAACT CCTTCTCAGGTGACATTCCAGGTGGTTTCGAAGCAGTAGAGGTTCTTGAC CTCTCTTCAAACCTTCTGAACGGCTCTCTTCCTCAGAACTTGGGAGGGAG AAGCCTGCATTACTTGAGCTTATCACACAACAAACTCTCCGGCGAGATTC CTCCAGGGTTTGCAGCAAAGTTTCCAGGAAACGCTACAGTCGATCTCTCC TTCAACAACCTAACAGGCCCAATCCCAACCTCCCTCTCTCTACTCAACCA AAAGGCTGAGGCTTTCTCCAGTAATCCAGAGCTGTGTGGGAAGCCGTTGA AGACCCTTTGTTCAATACCTTCCACTCTCTCAAACCCTCCAAACATACCT GAAAACACTTCCCCGGCTATAGCTGTCAAGCCAAGAAGCTCAGCTCCTCC AACAAACTCTTCAACAGAGTCACCAAACCAAACGGTGAAAAGCAAGCTGA AGCCAAGCACCATCGCCGGAATCATTGTTGCGGACATAGTTGGTCTAGCT ATCATAGGCCTCTTCGTGCTCTACGTTTACCAAGTCAGGAAACGAAGAAG GTCCCCAGAGTCCACCACGTTCAGCCTCTTCACAATCTGCCTTGACAAAA ACGAAGCCAAGAAATCAAAACCAAGCTTCGTCGTTGAGGTCAACGTCACT GAATCACCAGACGCTAAAACGTCTTGCGGCTCGTGCATCAACGGAGGAAG GTACGACGAGACGTCGACGTCAGAGAGCGACGTAGAGAACAACCAGCAAA CGGTTCAGGCATTTGATCGAACAGATGGGGGGCGATTGAAACAGAACGCT CAGACTAAACTAATCACAGTCGACGGAGAGACTCGTTTGGATTTGGACAC GCTACTAAAGGCCTCAGCTTACGTATTGGGAACCAACGTGACTAGAATCG TGTACAAGGCGGTTCTTGAAAACGGCACGGCGTTCGCGGTGCGGCGGATA GAAACGGAGAGCTGTGCGACGACGAAAGTTAAGGACTTTGAGCGGGAGGT TCGCGCTATAGCTAAGATTCGACACCCGAATCTCGTCAGGCTTCGTGGGT TCTGCTGGGGAAACGACGAGAAGCTTCTCATCTCCGACTATGTTCCCAAT GGCAGCCTCCTTGGCTCCTTCGCCGCAAGTAAGTTCCTCTGTTTCCTCTG TTTACTCTGTTTCATTTGGCGCACGAACTAAAATGCGCCTATCACTTATG CGCAGTTTAGCACATTAAAATACGCACGTCACTCTATTTTTTTAAAACTC CTTTTGTTTCTTTACAAACAGCAAAGACAAGCGCAAGCTCGTCTACACCA ACTATGCAACACCCACTTTCTTTCGAGGCGCGGCTCAAGATAGCTAAAGG AATGGCGCGGGGACTATCTTACATCAACGAGAAGAAACACGTGCACGGTA ACATCAAGCCCAATAACATTCTCTTAAACTCTGAGAATGAGCCCATCATC ACCGATCTGGGCCTAGACCGTCTCATGACACCAACGTCGAGCTCACCGTG CTACCAGCCACCGGAACGGTGTACAAGCGAGAAACCGAACCCTAAGTGGG ACGTTTATTCCTTCGGCGTCATTCTATTAGAACTTCTCACAGGCAAAACC TTTTCGGTCGATCAGGATGTAGATCAGTGGTCAGAGTTACTAGACGGTTC TGAAGCGGAAGAGAAAGGCCGGTTCTTGAGGTTAGTCGACGGTGCAATAA GAAGCGATGTGGCTCGGCATGAGGATGCTGCGATGGTGTGCTTCAGGTTA GGGATTGAATGTGTCTCTTCCTTGCCTCAGAAGCGACCGTCAATGAAGGA AGTAGTGCAAGCGTTGGAGAAAGTGAGTGTTTAG
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Coding sequence (CDS) from alignment at A01_BnaDARv10:1953787..1956170+

>A01p04220.1_BnaDARv10-RA ID=A01p04220.1_BnaDARv10-RA|Name=A01p04220.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=2241bp|location=Sequence derived from alignment at A01_BnaDARv10:1953787..1956170+ (Brassica napus)
ATGACTTTCAACCTAAGCAACCTCTTCTCATTATTCCTTCTCCACCTTCT
AGTCCCCACACAAGTCCAAGCTCTTAACGCTGATGGTGTTCTTCTGCTAT
CTTTCAAATACTCTATCCTCAGTGACCCTCTCTCCGTTCTACGCAACTGG
AACTATGACGATAAAACACCATGCTTGTGGACAGGTGTCACATGCACAGA
GCTTGGGAAGCCCAGAACACCAGACATGTTCAGAGTCACAAGCTTGGTAC
TTCCCAACAAACACCTTCTTGGCTCCATCGCTCCGGACTTGTTCTTCATT
CCGCATCTAAGGATCTTGGATCTATCCAGCAACTTCTTCAACGGGTCACT
CCCGGACTCGGTCTTCAATGCTACTGAGCTTAGTGTTATCTCCCTTGGAA
GCAACAATCTCTCTGGTGATTTGCCTACGAGTATCAGCAGTGACACAAAC
CTCCAGCTCTTGAACCTCTCAGCTAACGCATTTACAGGAAAAATACCGCT
CAGCCTCTCACTTCTGAAGAATTTAACGGCCGTTTCCTTGTCAAAGAACT
CCTTCTCAGGTGACATTCCAGGTGGTTTCGAAGCAGTAGAGGTTCTTGAC
CTCTCTTCAAACCTTCTGAACGGCTCTCTTCCTCAGAACTTGGGAGGGAG
AAGCCTGCATTACTTGAGCTTATCACACAACAAACTCTCCGGCGAGATTC
CTCCAGGGTTTGCAGCAAAGTTTCCAGGAAACGCTACAGTCGATCTCTCC
TTCAACAACCTAACAGGCCCAATCCCAACCTCCCTCTCTCTACTCAACCA
AAAGGCTGAGGCTTTCTCCAGTAATCCAGAGCTGTGTGGGAAGCCGTTGA
AGACCCTTTGTTCAATACCTTCCACTCTCTCAAACCCTCCAAACATACCT
GAAAACACTTCCCCGGCTATAGCTGTCAAGCCAAGAAGCTCAGCTCCTCC
AACAAACTCTTCAACAGAGTCACCAAACCAAACGGTGAAAAGCAAGCTGA
AGCCAAGCACCATCGCCGGAATCATTGTTGCGGACATAGTTGGTCTAGCT
ATCATAGGCCTCTTCGTGCTCTACGTTTACCAAGTCAGGAAACGAAGAAG
GTCCCCAGAGTCCACCACGTTCAGCCTCTTCACAATCTGCCTTGACAAAA
ACGAAGCCAAGAAATCAAAACCAAGCTTCGTCGTTGAGGTCAACGTCACT
GAATCACCAGACGCTAAAACGTCTTGCGGCTCGTGCATCAACGGAGGAAG
GTACGACGAGACGTCGACGTCAGAGAGCGACGTAGAGAACAACCAGCAAA
CGGTTCAGGCATTTGATCGAACAGATGGGGGGCGATTGAAACAGAACGCT
CAGACTAAACTAATCACAGTCGACGGAGAGACTCGTTTGGATTTGGACAC
GCTACTAAAGGCCTCAGCTTACGTATTGGGAACCAACGTGACTAGAATCG
TGTACAAGGCGGTTCTTGAAAACGGCACGGCGTTCGCGGTGCGGCGGATA
GAAACGGAGAGCTGTGCGACGACGAAAGTTAAGGACTTTGAGCGGGAGGT
TCGCGCTATAGCTAAGATTCGACACCCGAATCTCGTCAGGCTTCGTGGGT
TCTGCTGGGGAAACGACGAGAAGCTTCTCATCTCCGACTATGTTCCCAAT
GGCAGCCTCCTTGGCTCCTTCGCCGCAACAAAGACAAGCGCAAGCTCGTC
TACACCAACTATGCAACACCCACTTTCTTTCGAGGCGCGGCTCAAGATAG
CTAAAGGAATGGCGCGGGGACTATCTTACATCAACGAGAAGAAACACGTG
CACGGTAACATCAAGCCCAATAACATTCTCTTAAACTCTGAGAATGAGCC
CATCATCACCGATCTGGGCCTAGACCGTCTCATGACACCAACGTCGAGCT
CACCGTGCTACCAGCCACCGGAACGGTGTACAAGCGAGAAACCGAACCCT
AAGTGGGACGTTTATTCCTTCGGCGTCATTCTATTAGAACTTCTCACAGG
CAAAACCTTTTCGGTCGATCAGGATGTAGATCAGTGGTCAGAGTTACTAG
ACGGTTCTGAAGCGGAAGAGAAAGGCCGGTTCTTGAGGTTAGTCGACGGT
GCAATAAGAAGCGATGTGGCTCGGCATGAGGATGCTGCGATGGTGTGCTT
CAGGTTAGGGATTGAATGTGTCTCTTCCTTGCCTCAGAAGCGACCGTCAA
TGAAGGAAGTAGTGCAAGCGTTGGAGAAAGTGAGTGTTTAG
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