A01p04220.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	A01p04220.1_BnaDARv10-RA
Unique Name	A01p04220.1_BnaDARv10-RA
Type	mRNA
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A01_BnaDARv10	contig	A01_BnaDARv10:1953787..1956170 + View in Apollo

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Darmor-bzh OGS10 v10	2020-07-22

Properties


Property Name	Value
Stop	1
Start	1
Model size	2241
Exons	2
Cds size	2241

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
A01p04220.1_BnaDARv10	A01p04220.1_BnaDARv10	Brassica napus	gene	A01_BnaDARv10 1953787..1956170 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340473.9766784-CDS-A01_BnaDARv10:1953786..1955464	1626340473.9766784-CDS-A01_BnaDARv10:1953786..1955464	Brassica napus	CDS	A01_BnaDARv10 1953787..1955464 +
1626340473.9852498-CDS-A01_BnaDARv10:1955607..1956170	1626340473.9852498-CDS-A01_BnaDARv10:1955607..1956170	Brassica napus	CDS	A01_BnaDARv10 1955608..1956170 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p04220.1_BnaDARv10_exon1	A01p04220.1_BnaDARv10_exon1	Brassica napus	exon	A01_BnaDARv10 1953787..1955464 +
A01p04220.1_BnaDARv10_exon2	A01p04220.1_BnaDARv10_exon2	Brassica napus	exon	A01_BnaDARv10 1955608..1956170 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p04220.1_BnaDARv10-RA	A01p04220.1_BnaDARv10-PA	Brassica napus	polypeptide	A01_BnaDARv10 1953787..1956170 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at A01_BnaDARv10:1953787..1956170+
coding sequence from alignment at A01_BnaDARv10:1953787..1956170+

spliced messenger RNA

>A01p04220.1_BnaDARv10-RA ID=A01p04220.1_BnaDARv10-RA|Name=A01p04220.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2241bp|location=Sequence derived from alignment at A01_BnaDARv10:1953787..1956170+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTCAACCTAAGCAACCTCTTCTCATTATTCCTTCTCCACCTTCT
AGTCCCCACACAAGTCCAAGCTCTTAACGCTGATGGTGTTCTTCTGCTAT
CTTTCAAATACTCTATCCTCAGTGACCCTCTCTCCGTTCTACGCAACTGG
AACTATGACGATAAAACACCATGCTTGTGGACAGGTGTCACATGCACAGA
GCTTGGGAAGCCCAGAACACCAGACATGTTCAGAGTCACAAGCTTGGTAC
TTCCCAACAAACACCTTCTTGGCTCCATCGCTCCGGACTTGTTCTTCATT
CCGCATCTAAGGATCTTGGATCTATCCAGCAACTTCTTCAACGGGTCACT
CCCGGACTCGGTCTTCAATGCTACTGAGCTTAGTGTTATCTCCCTTGGAA
GCAACAATCTCTCTGGTGATTTGCCTACGAGTATCAGCAGTGACACAAAC
CTCCAGCTCTTGAACCTCTCAGCTAACGCATTTACAGGAAAAATACCGCT
CAGCCTCTCACTTCTGAAGAATTTAACGGCCGTTTCCTTGTCAAAGAACT
CCTTCTCAGGTGACATTCCAGGTGGTTTCGAAGCAGTAGAGGTTCTTGAC
CTCTCTTCAAACCTTCTGAACGGCTCTCTTCCTCAGAACTTGGGAGGGAG
AAGCCTGCATTACTTGAGCTTATCACACAACAAACTCTCCGGCGAGATTC
CTCCAGGGTTTGCAGCAAAGTTTCCAGGAAACGCTACAGTCGATCTCTCC
TTCAACAACCTAACAGGCCCAATCCCAACCTCCCTCTCTCTACTCAACCA
AAAGGCTGAGGCTTTCTCCAGTAATCCAGAGCTGTGTGGGAAGCCGTTGA
AGACCCTTTGTTCAATACCTTCCACTCTCTCAAACCCTCCAAACATACCT
GAAAACACTTCCCCGGCTATAGCTGTCAAGCCAAGAAGCTCAGCTCCTCC
AACAAACTCTTCAACAGAGTCACCAAACCAAACGGTGAAAAGCAAGCTGA
AGCCAAGCACCATCGCCGGAATCATTGTTGCGGACATAGTTGGTCTAGCT
ATCATAGGCCTCTTCGTGCTCTACGTTTACCAAGTCAGGAAACGAAGAAG
GTCCCCAGAGTCCACCACGTTCAGCCTCTTCACAATCTGCCTTGACAAAA
ACGAAGCCAAGAAATCAAAACCAAGCTTCGTCGTTGAGGTCAACGTCACT
GAATCACCAGACGCTAAAACGTCTTGCGGCTCGTGCATCAACGGAGGAAG
GTACGACGAGACGTCGACGTCAGAGAGCGACGTAGAGAACAACCAGCAAA
CGGTTCAGGCATTTGATCGAACAGATGGGGGGCGATTGAAACAGAACGCT
CAGACTAAACTAATCACAGTCGACGGAGAGACTCGTTTGGATTTGGACAC
GCTACTAAAGGCCTCAGCTTACGTATTGGGAACCAACGTGACTAGAATCG
TGTACAAGGCGGTTCTTGAAAACGGCACGGCGTTCGCGGTGCGGCGGATA
GAAACGGAGAGCTGTGCGACGACGAAAGTTAAGGACTTTGAGCGGGAGGT
TCGCGCTATAGCTAAGATTCGACACCCGAATCTCGTCAGGCTTCGTGGGT
TCTGCTGGGGAAACGACGAGAAGCTTCTCATCTCCGACTATGTTCCCAAT
GGCAGCCTCCTTGGCTCCTTCGCCGCAACAAAGACAAGCGCAAGCTCGTC
TACACCAACTATGCAACACCCACTTTCTTTCGAGGCGCGGCTCAAGATAG
CTAAAGGAATGGCGCGGGGACTATCTTACATCAACGAGAAGAAACACGTG
CACGGTAACATCAAGCCCAATAACATTCTCTTAAACTCTGAGAATGAGCC
CATCATCACCGATCTGGGCCTAGACCGTCTCATGACACCAACGTCGAGCT
CACCGTGCTACCAGCCACCGGAACGGTGTACAAGCGAGAAACCGAACCCT
AAGTGGGACGTTTATTCCTTCGGCGTCATTCTATTAGAACTTCTCACAGG
CAAAACCTTTTCGGTCGATCAGGATGTAGATCAGTGGTCAGAGTTACTAG
ACGGTTCTGAAGCGGAAGAGAAAGGCCGGTTCTTGAGGTTAGTCGACGGT
GCAATAAGAAGCGATGTGGCTCGGCATGAGGATGCTGCGATGGTGTGCTT
CAGGTTAGGGATTGAATGTGTCTCTTCCTTGCCTCAGAAGCGACCGTCAA
TGAAGGAAGTAGTGCAAGCGTTGGAGAAAGTGAGTGTTTAG

protein sequence of A01p04220.1_BnaDARv10-RA

>A01p04220.1_BnaDARv10-PA ID=A01p04220.1_BnaDARv10-PA|Name=A01p04220.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=747bp
MTFNLSNLFSLFLLHLLVPTQVQALNADGVLLLSFKYSILSDPLSVLRNW
NYDDKTPCLWTGVTCTELGKPRTPDMFRVTSLVLPNKHLLGSIAPDLFFI
PHLRILDLSSNFFNGSLPDSVFNATELSVISLGSNNLSGDLPTSISSDTN
LQLLNLSANAFTGKIPLSLSLLKNLTAVSLSKNSFSGDIPGGFEAVEVLD
LSSNLLNGSLPQNLGGRSLHYLSLSHNKLSGEIPPGFAAKFPGNATVDLS
FNNLTGPIPTSLSLLNQKAEAFSSNPELCGKPLKTLCSIPSTLSNPPNIP
ENTSPAIAVKPRSSAPPTNSSTESPNQTVKSKLKPSTIAGIIVADIVGLA
IIGLFVLYVYQVRKRRRSPESTTFSLFTICLDKNEAKKSKPSFVVEVNVT
ESPDAKTSCGSCINGGRYDETSTSESDVENNQQTVQAFDRTDGGRLKQNA
QTKLITVDGETRLDLDTLLKASAYVLGTNVTRIVYKAVLENGTAFAVRRI
ETESCATTKVKDFEREVRAIAKIRHPNLVRLRGFCWGNDEKLLISDYVPN
GSLLGSFAATKTSASSSTPTMQHPLSFEARLKIAKGMARGLSYINEKKHV
HGNIKPNNILLNSENEPIITDLGLDRLMTPTSSSPCYQPPERCTSEKPNP
KWDVYSFGVILLELLTGKTFSVDQDVDQWSELLDGSEAEEKGRFLRLVDG
AIRSDVARHEDAAMVCFRLGIECVSSLPQKRPSMKEVVQALEKVSV.

mRNA from alignment at A01_BnaDARv10:1953787..1956170+

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>A01p04220.1_BnaDARv10-RA ID=A01p04220.1_BnaDARv10-RA|Name=A01p04220.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2384bp|location=Sequence derived from alignment at A01_BnaDARv10:1953787..1956170+ (Brassica napus)
ATGACTTTCAACCTAAGCAACCTCTTCTCATTATTCCTTCTCCACCTTCT
AGTCCCCACACAAGTCCAAGCTCTTAACGCTGATGGTGTTCTTCTGCTAT
CTTTCAAATACTCTATCCTCAGTGACCCTCTCTCCGTTCTACGCAACTGG
AACTATGACGATAAAACACCATGCTTGTGGACAGGTGTCACATGCACAGA
GCTTGGGAAGCCCAGAACACCAGACATGTTCAGAGTCACAAGCTTGGTAC
TTCCCAACAAACACCTTCTTGGCTCCATCGCTCCGGACTTGTTCTTCATT
CCGCATCTAAGGATCTTGGATCTATCCAGCAACTTCTTCAACGGGTCACT
CCCGGACTCGGTCTTCAATGCTACTGAGCTTAGTGTTATCTCCCTTGGAA
GCAACAATCTCTCTGGTGATTTGCCTACGAGTATCAGCAGTGACACAAAC
CTCCAGCTCTTGAACCTCTCAGCTAACGCATTTACAGGAAAAATACCGCT
CAGCCTCTCACTTCTGAAGAATTTAACGGCCGTTTCCTTGTCAAAGAACT
CCTTCTCAGGTGACATTCCAGGTGGTTTCGAAGCAGTAGAGGTTCTTGAC
CTCTCTTCAAACCTTCTGAACGGCTCTCTTCCTCAGAACTTGGGAGGGAG
AAGCCTGCATTACTTGAGCTTATCACACAACAAACTCTCCGGCGAGATTC
CTCCAGGGTTTGCAGCAAAGTTTCCAGGAAACGCTACAGTCGATCTCTCC
TTCAACAACCTAACAGGCCCAATCCCAACCTCCCTCTCTCTACTCAACCA
AAAGGCTGAGGCTTTCTCCAGTAATCCAGAGCTGTGTGGGAAGCCGTTGA
AGACCCTTTGTTCAATACCTTCCACTCTCTCAAACCCTCCAAACATACCT
GAAAACACTTCCCCGGCTATAGCTGTCAAGCCAAGAAGCTCAGCTCCTCC
AACAAACTCTTCAACAGAGTCACCAAACCAAACGGTGAAAAGCAAGCTGA
AGCCAAGCACCATCGCCGGAATCATTGTTGCGGACATAGTTGGTCTAGCT
ATCATAGGCCTCTTCGTGCTCTACGTTTACCAAGTCAGGAAACGAAGAAG
GTCCCCAGAGTCCACCACGTTCAGCCTCTTCACAATCTGCCTTGACAAAA
ACGAAGCCAAGAAATCAAAACCAAGCTTCGTCGTTGAGGTCAACGTCACT
GAATCACCAGACGCTAAAACGTCTTGCGGCTCGTGCATCAACGGAGGAAG
GTACGACGAGACGTCGACGTCAGAGAGCGACGTAGAGAACAACCAGCAAA
CGGTTCAGGCATTTGATCGAACAGATGGGGGGCGATTGAAACAGAACGCT
CAGACTAAACTAATCACAGTCGACGGAGAGACTCGTTTGGATTTGGACAC
GCTACTAAAGGCCTCAGCTTACGTATTGGGAACCAACGTGACTAGAATCG
TGTACAAGGCGGTTCTTGAAAACGGCACGGCGTTCGCGGTGCGGCGGATA
GAAACGGAGAGCTGTGCGACGACGAAAGTTAAGGACTTTGAGCGGGAGGT
TCGCGCTATAGCTAAGATTCGACACCCGAATCTCGTCAGGCTTCGTGGGT
TCTGCTGGGGAAACGACGAGAAGCTTCTCATCTCCGACTATGTTCCCAAT
GGCAGCCTCCTTGGCTCCTTCGCCGCAAGTAAGTTCCTCTGTTTCCTCTG
TTTACTCTGTTTCATTTGGCGCACGAACTAAAATGCGCCTATCACTTATG
CGCAGTTTAGCACATTAAAATACGCACGTCACTCTATTTTTTTAAAACTC
CTTTTGTTTCTTTACAAACAGCAAAGACAAGCGCAAGCTCGTCTACACCA
ACTATGCAACACCCACTTTCTTTCGAGGCGCGGCTCAAGATAGCTAAAGG
AATGGCGCGGGGACTATCTTACATCAACGAGAAGAAACACGTGCACGGTA
ACATCAAGCCCAATAACATTCTCTTAAACTCTGAGAATGAGCCCATCATC
ACCGATCTGGGCCTAGACCGTCTCATGACACCAACGTCGAGCTCACCGTG
CTACCAGCCACCGGAACGGTGTACAAGCGAGAAACCGAACCCTAAGTGGG
ACGTTTATTCCTTCGGCGTCATTCTATTAGAACTTCTCACAGGCAAAACC
TTTTCGGTCGATCAGGATGTAGATCAGTGGTCAGAGTTACTAGACGGTTC
TGAAGCGGAAGAGAAAGGCCGGTTCTTGAGGTTAGTCGACGGTGCAATAA
GAAGCGATGTGGCTCGGCATGAGGATGCTGCGATGGTGTGCTTCAGGTTA
GGGATTGAATGTGTCTCTTCCTTGCCTCAGAAGCGACCGTCAATGAAGGA
AGTAGTGCAAGCGTTGGAGAAAGTGAGTGTTTAG

Coding sequence (CDS) from alignment at A01_BnaDARv10:1953787..1956170+

>A01p04220.1_BnaDARv10-RA ID=A01p04220.1_BnaDARv10-RA|Name=A01p04220.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=2241bp|location=Sequence derived from alignment at A01_BnaDARv10:1953787..1956170+ (Brassica napus)
ATGACTTTCAACCTAAGCAACCTCTTCTCATTATTCCTTCTCCACCTTCT
AGTCCCCACACAAGTCCAAGCTCTTAACGCTGATGGTGTTCTTCTGCTAT
CTTTCAAATACTCTATCCTCAGTGACCCTCTCTCCGTTCTACGCAACTGG
AACTATGACGATAAAACACCATGCTTGTGGACAGGTGTCACATGCACAGA
GCTTGGGAAGCCCAGAACACCAGACATGTTCAGAGTCACAAGCTTGGTAC
TTCCCAACAAACACCTTCTTGGCTCCATCGCTCCGGACTTGTTCTTCATT
CCGCATCTAAGGATCTTGGATCTATCCAGCAACTTCTTCAACGGGTCACT
CCCGGACTCGGTCTTCAATGCTACTGAGCTTAGTGTTATCTCCCTTGGAA
GCAACAATCTCTCTGGTGATTTGCCTACGAGTATCAGCAGTGACACAAAC
CTCCAGCTCTTGAACCTCTCAGCTAACGCATTTACAGGAAAAATACCGCT
CAGCCTCTCACTTCTGAAGAATTTAACGGCCGTTTCCTTGTCAAAGAACT
CCTTCTCAGGTGACATTCCAGGTGGTTTCGAAGCAGTAGAGGTTCTTGAC
CTCTCTTCAAACCTTCTGAACGGCTCTCTTCCTCAGAACTTGGGAGGGAG
AAGCCTGCATTACTTGAGCTTATCACACAACAAACTCTCCGGCGAGATTC
CTCCAGGGTTTGCAGCAAAGTTTCCAGGAAACGCTACAGTCGATCTCTCC
TTCAACAACCTAACAGGCCCAATCCCAACCTCCCTCTCTCTACTCAACCA
AAAGGCTGAGGCTTTCTCCAGTAATCCAGAGCTGTGTGGGAAGCCGTTGA
AGACCCTTTGTTCAATACCTTCCACTCTCTCAAACCCTCCAAACATACCT
GAAAACACTTCCCCGGCTATAGCTGTCAAGCCAAGAAGCTCAGCTCCTCC
AACAAACTCTTCAACAGAGTCACCAAACCAAACGGTGAAAAGCAAGCTGA
AGCCAAGCACCATCGCCGGAATCATTGTTGCGGACATAGTTGGTCTAGCT
ATCATAGGCCTCTTCGTGCTCTACGTTTACCAAGTCAGGAAACGAAGAAG
GTCCCCAGAGTCCACCACGTTCAGCCTCTTCACAATCTGCCTTGACAAAA
ACGAAGCCAAGAAATCAAAACCAAGCTTCGTCGTTGAGGTCAACGTCACT
GAATCACCAGACGCTAAAACGTCTTGCGGCTCGTGCATCAACGGAGGAAG
GTACGACGAGACGTCGACGTCAGAGAGCGACGTAGAGAACAACCAGCAAA
CGGTTCAGGCATTTGATCGAACAGATGGGGGGCGATTGAAACAGAACGCT
CAGACTAAACTAATCACAGTCGACGGAGAGACTCGTTTGGATTTGGACAC
GCTACTAAAGGCCTCAGCTTACGTATTGGGAACCAACGTGACTAGAATCG
TGTACAAGGCGGTTCTTGAAAACGGCACGGCGTTCGCGGTGCGGCGGATA
GAAACGGAGAGCTGTGCGACGACGAAAGTTAAGGACTTTGAGCGGGAGGT
TCGCGCTATAGCTAAGATTCGACACCCGAATCTCGTCAGGCTTCGTGGGT
TCTGCTGGGGAAACGACGAGAAGCTTCTCATCTCCGACTATGTTCCCAAT
GGCAGCCTCCTTGGCTCCTTCGCCGCAACAAAGACAAGCGCAAGCTCGTC
TACACCAACTATGCAACACCCACTTTCTTTCGAGGCGCGGCTCAAGATAG
CTAAAGGAATGGCGCGGGGACTATCTTACATCAACGAGAAGAAACACGTG
CACGGTAACATCAAGCCCAATAACATTCTCTTAAACTCTGAGAATGAGCC
CATCATCACCGATCTGGGCCTAGACCGTCTCATGACACCAACGTCGAGCT
CACCGTGCTACCAGCCACCGGAACGGTGTACAAGCGAGAAACCGAACCCT
AAGTGGGACGTTTATTCCTTCGGCGTCATTCTATTAGAACTTCTCACAGG
CAAAACCTTTTCGGTCGATCAGGATGTAGATCAGTGGTCAGAGTTACTAG
ACGGTTCTGAAGCGGAAGAGAAAGGCCGGTTCTTGAGGTTAGTCGACGGT
GCAATAAGAAGCGATGTGGCTCGGCATGAGGATGCTGCGATGGTGTGCTT
CAGGTTAGGGATTGAATGTGTCTCTTCCTTGCCTCAGAAGCGACCGTCAA
TGAAGGAAGTAGTGCAAGCGTTGGAGAAAGTGAGTGTTTAG

Orthology

View orthology data for A01p04220.1_BnaDARv10-RA

Metabolic Model

View data from metabolic model for A01p04220.1_BnaDARv10-RA