A01p00160.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p00160.1_BnaDARv10-RA
Unique NameA01p00160.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:90519..92825 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size1479
Exons5
Cds size1479
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p00160.1_BnaDARv10A01p00160.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 90519..92825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p00160.1_BnaDARv10-RAA01p00160.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 90519..92825 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340430.0179372-CDS-A01_BnaDARv10:90518..908511626340430.0179372-CDS-A01_BnaDARv10:90518..90851Brassica napusCDSA01_BnaDARv10 90519..90851 -
1626340430.0305824-CDS-A01_BnaDARv10:90937..912131626340430.0305824-CDS-A01_BnaDARv10:90937..91213Brassica napusCDSA01_BnaDARv10 90938..91213 -
1626340430.0404153-CDS-A01_BnaDARv10:91356..915181626340430.0404153-CDS-A01_BnaDARv10:91356..91518Brassica napusCDSA01_BnaDARv10 91357..91518 -
1626340430.0498846-CDS-A01_BnaDARv10:91607..919071626340430.0498846-CDS-A01_BnaDARv10:91607..91907Brassica napusCDSA01_BnaDARv10 91608..91907 -
1626340430.0570753-CDS-A01_BnaDARv10:92417..928251626340430.0570753-CDS-A01_BnaDARv10:92417..92825Brassica napusCDSA01_BnaDARv10 92418..92825 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p00160.1_BnaDARv10_exon1A01p00160.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 90519..90851 -
A01p00160.1_BnaDARv10_exon2A01p00160.1_BnaDARv10_exon2Brassica napusexonA01_BnaDARv10 90938..91213 -
A01p00160.1_BnaDARv10_exon3A01p00160.1_BnaDARv10_exon3Brassica napusexonA01_BnaDARv10 91357..91518 -
A01p00160.1_BnaDARv10_exon4A01p00160.1_BnaDARv10_exon4Brassica napusexonA01_BnaDARv10 91608..91907 -
A01p00160.1_BnaDARv10_exon5A01p00160.1_BnaDARv10_exon5Brassica napusexonA01_BnaDARv10 92418..92825 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p00160.1_BnaDARv10-RA ID=A01p00160.1_BnaDARv10-RA|Name=A01p00160.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1479bp|location=Sequence derived from alignment at A01_BnaDARv10:90519..92825- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACCATCGATTTTAATCTTAACAGTTTTCGTACTTCTCCTCCTGGT
ACCAACGGTGATTCCTCACAACTACTCGGATGCTCTGCATAAGTCAATCC
TATTTTTCGAAGGTCAACGCTCCGGTCGACTTCCCAGACAACAAAGGATG
TTGTGGCGTGGTGACTCTGCACTCAAGGACGGCGAAAACCTCAACACCGA
CCTCGTTGGTGGTTACTACGACGCCGGTGACAACGTTAAGTTTCATTTTC
CAATGGCTTTTACGGCCACGATGCTTGCTTGGAGTTCTATCGACTTCAGT
TGTTACATGTCTGACAATGATTTTAGACACAACCTCGTAAATATCAAGTG
GGCTACTGATTATCTCCTTAAGACTGTCTCACAACTCCCTCATCGCATTT
TCGTCCAAGTAGGTGAAGCACAGCCCGACCATAATTGTTGGGAAAGACCG
GAAGATATGGATACGCCACGAACCGCTTTCGCTCTAGATGCACCAGGGCC
AGCCTCCGATCTAGCGGGTGAAATCGCTGCAGCTCTGGCAGCTGCTTCTA
TCGCATTCAAACAATCGAGGCCTACATATTCCAAATTATTGCTCAGCAAA
GCCATACAAACGTTTCAGTACGCAGATATGCATCGAGGTTCTTATGCCGA
CAATCAGAACGTGCACAACGCCGCTTGCCCTTTCTACTGCAGTAATAATG
GATATAAGGATGAGTTGCTCTGGGGAGCTGCGTGGTTGAGGAGGGCGACT
GGTAGTGATAATTACCTAGAGTACTTGGTGAACAATCGTGAAACTTTCGG
TGTAGATTACAATTACTTGGACTTTGGCTGGGACAGCAAATTTGGGGGAG
TTGATGTTCTCATTGCCAAGGAAGTATTTGAGAAGAATGTGAGTGCGTTA
ACACCATTTAAAGATATTGCGGAGAAAATGATGTGTGCAGTATTTCCGGA
AACCGCTGGTCTACACATGAGTTACACACCCGGCGGTCTTCTTTACAAAC
CCGTTGGCAGCCAGCTCCAGAGCACGGCCGCAATGTCTTTCCTCATCCTT
ACCTACGCGGACTACCTCTCTAAATCCTCGCAACAACTCAGTTGCGGTAA
CCTCAAGTTTCAACCCGATTCTCTTCGGCGCATAGTTAAACGACAGGTGG
ACTACATTTTGGGAGATAATCCAATGCACGTGTCATACATGGTTGGGTAC
GGCGATCAGTACCCGCGACAGGTCCACCACCGTGGCTCGTCTATACCGTC
TGTTAAGGTTCAAAGCACTGCGTTCGGGTGCACACAAGGATGGAATATTT
TCCATTCAGACAATCCAAACCCAAACATATTAGTAGGAGCGGTGGTTGGC
GGGCCTAACGTAGATGATACATTCATTGGAAAACGGACAAATGCTACCGA
CACTGAGCCCACGACGTATATCAATGCACCTCTAGTTGGTGTCTTTGCCT
ATTTTAATAGCAATCCCAACATCACCTGA
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protein sequence of A01p00160.1_BnaDARv10-RA

>A01p00160.1_BnaDARv10-PA ID=A01p00160.1_BnaDARv10-PA|Name=A01p00160.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=493bp
MKPSILILTVFVLLLLVPTVIPHNYSDALHKSILFFEGQRSGRLPRQQRM
LWRGDSALKDGENLNTDLVGGYYDAGDNVKFHFPMAFTATMLAWSSIDFS
CYMSDNDFRHNLVNIKWATDYLLKTVSQLPHRIFVQVGEAQPDHNCWERP
EDMDTPRTAFALDAPGPASDLAGEIAAALAAASIAFKQSRPTYSKLLLSK
AIQTFQYADMHRGSYADNQNVHNAACPFYCSNNGYKDELLWGAAWLRRAT
GSDNYLEYLVNNRETFGVDYNYLDFGWDSKFGGVDVLIAKEVFEKNVSAL
TPFKDIAEKMMCAVFPETAGLHMSYTPGGLLYKPVGSQLQSTAAMSFLIL
TYADYLSKSSQQLSCGNLKFQPDSLRRIVKRQVDYILGDNPMHVSYMVGY
GDQYPRQVHHRGSSIPSVKVQSTAFGCTQGWNIFHSDNPNPNILVGAVVG
GPNVDDTFIGKRTNATDTEPTTYINAPLVGVFAYFNSNPNIT.
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mRNA from alignment at A01_BnaDARv10:90519..92825-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p00160.1_BnaDARv10-RA ID=A01p00160.1_BnaDARv10-RA|Name=A01p00160.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2307bp|location=Sequence derived from alignment at A01_BnaDARv10:90519..92825- (Brassica napus)
ATGAAACCATCGATTTTAATCTTAACAGTTTTCGTACTTCTCCTCCTGGT
ACCAACGGTGATTCCTCACAACTACTCGGATGCTCTGCATAAGTCAATCC
TATTTTTCGAAGGTCAACGCTCCGGTCGACTTCCCAGACAACAAAGGATG
TTGTGGCGTGGTGACTCTGCACTCAAGGACGGCGAAAACCTCAACACCGA
CCTCGTTGGTGGTTACTACGACGCCGGTGACAACGTTAAGTTTCATTTTC
CAATGGCTTTTACGGCCACGATGCTTGCTTGGAGTTCTATCGACTTCAGT
TGTTACATGTCTGACAATGATTTTAGACACAACCTCGTAAATATCAAGTG
GGCTACTGATTATCTCCTTAAGACTGTCTCACAACTCCCTCATCGCATTT
TCGTCCAAGTATGTTCGTATAAACAAACCGCTAATGCACCGTCATTTTTT
TAAATACCATCTACTGACATAACAGTTATAGTATAAAATCTTTTTAATAT
TTATATGAGTTCCCTATTTATATTCACCAGTACACACCAACATCGTTATC
AAGAATTTGTTTTTCACCATTTTGTCGTGCGTTGTCGGCATTTTTAAGAA
TTTTACAATTGAAAAATAGAGTCGGGATATAAACGGATGAATGGGTATAC
GAGTGTGTAGTTAATATTAATTTGCACTTATCAAGATTTGTAAACATTAT
ATAATATAGTTATAATATAGTAGAAAGGAAATCATAGAACTTCAAGGTAT
GTTGATGATGATGAGAGAATCAAATTGTATATCATCTCTGAGAAGAAGCA
ATCAATTTCCACTGATTGGTTTGTCCTAGCTTGTATTATATTTTTCGGAA
ATCAGGGCTTTAAATGAAAATATACTATATGGCACACACGCTAACAATAT
AAGATTAATATGCTATAGGTAGGTGAAGCACAGCCCGACCATAATTGTTG
GGAAAGACCGGAAGATATGGATACGCCACGAACCGCTTTCGCTCTAGATG
CACCAGGGCCAGCCTCCGATCTAGCGGGTGAAATCGCTGCAGCTCTGGCA
GCTGCTTCTATCGCATTCAAACAATCGAGGCCTACATATTCCAAATTATT
GCTCAGCAAAGCCATACAAACGTTTCAGTACGCAGATATGCATCGAGGTT
CTTATGCCGACAATCAGAACGTGCACAACGCCGCTTGCCCTTTCTACTGC
AGTAATAATGGATATAAGGTATACCTTTATTCGAAATTTAATATGTCTAT
AGTACCGGCTTTTTAAATATTTTATATTTCATATAAAATGGTATTGTTTT
CATGTAGGATGAGTTGCTCTGGGGAGCTGCGTGGTTGAGGAGGGCGACTG
GTAGTGATAATTACCTAGAGTACTTGGTGAACAATCGTGAAACTTTCGGT
GTAGATTACAATTACTTGGACTTTGGCTGGGACAGCAAATTTGGGGGAGT
TGATGTTCTCATTGCCAAGGTTTGATCCAGCTCTCTCTCTCTCTCTATGT
ATATATAAATATATGATCTTTCAAAACCACTAGGTCAAATTATATAAAAG
ACATAATTAACCATTGATATACTATTAGTGCTTGCCATTTAAACGTCAAT
TTGGGTGAACAGGAAGTATTTGAGAAGAATGTGAGTGCGTTAACACCATT
TAAAGATATTGCGGAGAAAATGATGTGTGCAGTATTTCCGGAAACCGCTG
GTCTACACATGAGTTACACACCCGGCGGTCTTCTTTACAAACCCGTTGGC
AGCCAGCTCCAGAGCACGGCCGCAATGTCTTTCCTCATCCTTACCTACGC
GGACTACCTCTCTAAATCCTCGCAACAACTCAGTTGCGGTAACCTCAAGT
TTCAACCCGATTCTCTTCGGCGCATAGTTAAACGACAGGTACTCAAACAT
CATTTGTTATTGTGTATATATGCTTTAGATAGGCCCATCAAAGGCATATG
CATTTTTTTTTTTGCGGTACATAGGTGGACTACATTTTGGGAGATAATCC
AATGCACGTGTCATACATGGTTGGGTACGGCGATCAGTACCCGCGACAGG
TCCACCACCGTGGCTCGTCTATACCGTCTGTTAAGGTTCAAAGCACTGCG
TTCGGGTGCACACAAGGATGGAATATTTTCCATTCAGACAATCCAAACCC
AAACATATTAGTAGGAGCGGTGGTTGGCGGGCCTAACGTAGATGATACAT
TCATTGGAAAACGGACAAATGCTACCGACACTGAGCCCACGACGTATATC
AATGCACCTCTAGTTGGTGTCTTTGCCTATTTTAATAGCAATCCCAACAT
CACCTGA
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Coding sequence (CDS) from alignment at A01_BnaDARv10:90519..92825-

>A01p00160.1_BnaDARv10-RA ID=A01p00160.1_BnaDARv10-RA|Name=A01p00160.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1479bp|location=Sequence derived from alignment at A01_BnaDARv10:90519..92825- (Brassica napus)
ATGAAACCATCGATTTTAATCTTAACAGTTTTCGTACTTCTCCTCCTGGT
ACCAACGGTGATTCCTCACAACTACTCGGATGCTCTGCATAAGTCAATCC
TATTTTTCGAAGGTCAACGCTCCGGTCGACTTCCCAGACAACAAAGGATG
TTGTGGCGTGGTGACTCTGCACTCAAGGACGGCGAAAACCTCAACACCGA
CCTCGTTGGTGGTTACTACGACGCCGGTGACAACGTTAAGTTTCATTTTC
CAATGGCTTTTACGGCCACGATGCTTGCTTGGAGTTCTATCGACTTCAGT
TGTTACATGTCTGACAATGATTTTAGACACAACCTCGTAAATATCAAGTG
GGCTACTGATTATCTCCTTAAGACTGTCTCACAACTCCCTCATCGCATTT
TCGTCCAAGTAGGTGAAGCACAGCCCGACCATAATTGTTGGGAAAGACCG
GAAGATATGGATACGCCACGAACCGCTTTCGCTCTAGATGCACCAGGGCC
AGCCTCCGATCTAGCGGGTGAAATCGCTGCAGCTCTGGCAGCTGCTTCTA
TCGCATTCAAACAATCGAGGCCTACATATTCCAAATTATTGCTCAGCAAA
GCCATACAAACGTTTCAGTACGCAGATATGCATCGAGGTTCTTATGCCGA
CAATCAGAACGTGCACAACGCCGCTTGCCCTTTCTACTGCAGTAATAATG
GATATAAGGATGAGTTGCTCTGGGGAGCTGCGTGGTTGAGGAGGGCGACT
GGTAGTGATAATTACCTAGAGTACTTGGTGAACAATCGTGAAACTTTCGG
TGTAGATTACAATTACTTGGACTTTGGCTGGGACAGCAAATTTGGGGGAG
TTGATGTTCTCATTGCCAAGGAAGTATTTGAGAAGAATGTGAGTGCGTTA
ACACCATTTAAAGATATTGCGGAGAAAATGATGTGTGCAGTATTTCCGGA
AACCGCTGGTCTACACATGAGTTACACACCCGGCGGTCTTCTTTACAAAC
CCGTTGGCAGCCAGCTCCAGAGCACGGCCGCAATGTCTTTCCTCATCCTT
ACCTACGCGGACTACCTCTCTAAATCCTCGCAACAACTCAGTTGCGGTAA
CCTCAAGTTTCAACCCGATTCTCTTCGGCGCATAGTTAAACGACAGGTGG
ACTACATTTTGGGAGATAATCCAATGCACGTGTCATACATGGTTGGGTAC
GGCGATCAGTACCCGCGACAGGTCCACCACCGTGGCTCGTCTATACCGTC
TGTTAAGGTTCAAAGCACTGCGTTCGGGTGCACACAAGGATGGAATATTT
TCCATTCAGACAATCCAAACCCAAACATATTAGTAGGAGCGGTGGTTGGC
GGGCCTAACGTAGATGATACATTCATTGGAAAACGGACAAATGCTACCGA
CACTGAGCCCACGACGTATATCAATGCACCTCTAGTTGGTGTCTTTGCCT
ATTTTAATAGCAATCCCAACATCACCTGA
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