C09p75680.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	C09p75680.1_BnaDARv10-RA
Unique Name	C09p75680.1_BnaDARv10-PA
Type	polypeptide
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)
Sequence length	251

Homology

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BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013584599.1 (PREDICTED: developmental protein SEPALLATA 2 [Brassica oleracea var. oleracea] >AGT20512.1 SEP2.b [Brassica oleracea var. viridis] >CDY43239.1 BnaC05g48320D [Brassica napus])

HSP 1 Score: 499 bits (1284), Expect = 3.830e-178
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0

Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250

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BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009147359.1 (developmental protein SEPALLATA 2 [Brassica rapa] >VDC73430.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 487 bits (1253), Expect = 2.040e-173
Identity = 242/250 (96.80%), Postives = 246/250 (98.40%), Query Frame = 0

Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIG+RSH +GGAWEGGDQQNVAYGHHQ Q QGLFQSLECDPTLQIGY+HPVCSEQMAVTTQGQ QPGNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGMRSHHVGGAWEGGDQQNVAYGHHQTQPQGLFQSLECDPTLQIGYNHPVCSEQMAVTTQGQTQPGNGYIPGWML 250

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BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013678402.1 (developmental protein SEPALLATA 2 [Brassica napus] >RID64663.1 hypothetical protein BRARA_E03583 [Brassica rapa])

HSP 1 Score: 485 bits (1249), Expect = 8.310e-173
Identity = 241/250 (96.40%), Postives = 246/250 (98.40%), Query Frame = 0

Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQLTDLQGKEH+LLEANRALSIKLEDMIG+RSH +GGAWEGGDQQNVAYGHHQ Q QGLFQSLECDPTLQIGY+HPVCSEQMAVTTQGQ QPGNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLTDLQGKEHILLEANRALSIKLEDMIGMRSHHVGGAWEGGDQQNVAYGHHQTQPQGLFQSLECDPTLQIGYNHPVCSEQMAVTTQGQTQPGNGYIPGWML 250

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BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY57524.1 (BnaA05g33600D [Brassica napus])

HSP 1 Score: 485 bits (1248), Expect = 1.180e-172
Identity = 241/250 (96.40%), Postives = 246/250 (98.40%), Query Frame = 0

Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIG+RSH +GGAWEGGDQQNVAYGHHQ Q QGLFQSLECDPTLQIGY+HPVCSEQMAVTTQG +QPGNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGMRSHHVGGAWEGGDQQNVAYGHHQTQPQGLFQSLECDPTLQIGYNHPVCSEQMAVTTQGPSQPGNGYIPGWML 250

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BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_018490821.1 (PREDICTED: developmental protein SEPALLATA 2 [Raphanus sativus])

HSP 1 Score: 484 bits (1247), Expect = 1.680e-172
Identity = 240/250 (96.00%), Postives = 246/250 (98.40%), Query Frame = 0

Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGS+EVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALS+KLEDMIG+RSH +GG WEGGDQQNVAYGHHQ QSQGLFQSLECDPTLQIGY+HPVCSEQMAVTTQGQ QPGNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSMKLEDMIGMRSHHVGGTWEGGDQQNVAYGHHQTQSQGLFQSLECDPTLQIGYNHPVCSEQMAVTTQGQIQPGNGYIPGWML 250

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BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_006408426.1 (developmental protein SEPALLATA 2 isoform X1 [Eutrema salsugineum] >ESQ49879.1 hypothetical protein EUTSA_v10021390mg [Eutrema salsugineum])

HSP 1 Score: 481 bits (1238), Expect = 3.950e-171
Identity = 239/250 (95.60%), Postives = 248/250 (99.20%), Query Frame = 0

Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCS+SNMLKTL+RYQKCSYGS+EVNNKPAKELENSYREYLKLKGRYENLQ QQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQLTDLQGKEH+LLEANRALS+KLEDMIGVRSH IGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGY++PVCSEQMAVTTQGQ+QPGNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSSSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLTDLQGKEHILLEANRALSMKLEDMIGVRSHHIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYNNPVCSEQMAVTTQGQSQPGNGYIPGWML 250

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BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: CAA7038589.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 476 bits (1225), Expect = 3.790e-169
Identity = 237/250 (94.80%), Postives = 245/250 (98.00%), Query Frame = 0

Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTL+RYQKCSYGS+EVNNKPAKELENSYREYLKLKGRYENLQ QQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQLTDLQGKEH+LLEANRALS+KLEDMIGVRSH IGGAWEG DQQNVAYGHHQAQ+QGLFQSL+CDPTLQIGY+HPVCSEQMAVTTQGQ Q GNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLTDLQGKEHILLEANRALSMKLEDMIGVRSHHIGGAWEGDDQQNVAYGHHQAQNQGLFQSLQCDPTLQIGYNHPVCSEQMAVTTQGQPQQGNGYIPGWML 250

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BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_010485469.1 (PREDICTED: developmental protein SEPALLATA 2 [Camelina sativa])

HSP 1 Score: 475 bits (1223), Expect = 7.640e-169
Identity = 236/250 (94.40%), Postives = 244/250 (97.60%), Query Frame = 0

Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTL+RYQKCSYGS+EVNNKPAKELENSYREYLKLKGRYE+LQ QQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQL+DLQGKEH+LLEANRALSIKLEDMIGVR H IGGAWE GDQQNVAYGHHQA SQGL+QSLECDPTLQIGY HPVCSEQMAVTTQGQ+QPGNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYESLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLEANRALSIKLEDMIGVRHHHIGGAWEAGDQQNVAYGHHQAHSQGLYQSLECDPTLQIGYGHPVCSEQMAVTTQGQSQPGNGYIPGWML 250

[Close]

BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_006298399.1 (developmental protein SEPALLATA 2 isoform X1 [Capsella rubella] >EOA31297.1 hypothetical protein CARUB_v10014470mg [Capsella rubella])

HSP 1 Score: 473 bits (1218), Expect = 4.420e-168
Identity = 234/250 (93.60%), Postives = 241/250 (96.40%), Query Frame = 0

Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTL+RYQKCSYGS+EVNNKPAKELENSYREYLKLKGRYENLQ QQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQL+DLQGKEH+LLEANRALS+KLEDMIGVR H IGGAWE GDQQNV YGHHQA SQGL+QSLECDPTLQIGY HPVCSEQMAV TQG NQPGNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLEANRALSVKLEDMIGVRHHHIGGAWEAGDQQNVVYGHHQAHSQGLYQSLECDPTLQIGYGHPVCSEQMAVATQGHNQPGNGYIPGWML 250

[Close]

BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013647476.1 (developmental protein SEPALLATA 2-like [Brassica napus])

HSP 1 Score: 473 bits (1218), Expect = 4.750e-168
Identity = 240/252 (95.24%), Postives = 247/252 (98.02%), Query Frame = 0

Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQN-QPGN-GYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTL+RYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQ QQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQLTDLQGKEH+LLEANRALS+KLEDMIGVRSHQIGGAWEGGDQ NVAYGHHQAQSQGLFQSLECDPTLQ+GY+HPVCSEQMAVT QGQ+ QPGN GYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLTDLQGKEHILLEANRALSMKLEDMIGVRSHQIGGAWEGGDQHNVAYGHHQAQSQGLFQSLECDPTLQMGYNHPVCSEQMAVTAQGQSSQPGNNGYIPGWML 252

The following BLAST results are available for this feature:

BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein

BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
XP_013584599.1	3.830e-178	100.00	PREDICTED: developmental protein SEPALLATA 2 [Bras...	[more]
XP_009147359.1	2.040e-173	96.80	developmental protein SEPALLATA 2 [Brassica rapa] ...	[more]
XP_013678402.1	8.310e-173	96.40	developmental protein SEPALLATA 2 [Brassica napus]...	[more]
CDY57524.1	1.180e-172	96.40	BnaA05g33600D [Brassica napus]	[more]
XP_018490821.1	1.680e-172	96.00	PREDICTED: developmental protein SEPALLATA 2 [Raph...	[more]
XP_006408426.1	3.950e-171	95.60	developmental protein SEPALLATA 2 isoform X1 [Eutr...	[more]
CAA7038589.1	3.790e-169	94.80	unnamed protein product [Microthlaspi erraticum]	[more]
XP_010485469.1	7.640e-169	94.40	PREDICTED: developmental protein SEPALLATA 2 [Came...	[more]
XP_006298399.1	4.420e-168	93.60	developmental protein SEPALLATA 2 isoform X1 [Caps...	[more]
XP_013647476.1	4.750e-168	95.24	developmental protein SEPALLATA 2-like [Brassica n...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0048481	plant ovule development
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding
molecular_function	GO:0000981	RNA polymerase II transcription factor activity, sequence-specific DNA binding

InterPro

Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 125..145
None	No IPR available	COILS	Coil	Coil	coord: 85..108
None	No IPR available	PANTHER	PTHR11945:SF415	DEVELOPMENTAL PROTEIN SEPALLATA 2	coord: 1..236
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 1..236
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 38..59 score: 64.94 coord: 23..38 score: 86.34 coord: 3..23 score: 68.71
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 4.2E-41 score: 152.5
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 1.1E-25 score: 88.8
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 33.319
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 85..172 e-value: 8.0E-24 score: 83.7
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 88..178 score: 13.827
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..84 e-value: 5.4E-27 score: 95.4
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..79
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 2..77 e-value: 4.51938E-46 score: 146.543

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C09_BnaDARv10	contig	C09_BnaDARv10:66070706..66072768 - View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on Darmor-bzh OGS10 v10	2021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR	2021-04-17
Blast2GO on Darmor-bzh OGS10 v10	2021-04-17
Darmor-bzh OGS10 v10	2020-07-22

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
C09p75680.1_BnaDARv10-RA	C09p75680.1_BnaDARv10-RA	Brassica napus	mRNA	C09_BnaDARv10 66070706..66072784 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>C09p75680.1_BnaDARv10-PA ID=C09p75680.1_BnaDARv10-PA|Name=C09p75680.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=251bp
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSN
RGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKG
RYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQ
LTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHH
QAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML
.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR033896	MADS_MEF2-like
IPR036879	TF_MADSbox_sf
IPR002487	TF_Kbox
IPR002100	TF_MADSbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0000981	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0046983	protein dimerization activity
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0045944	positive regulation of transcription by RNA polymerase II
GO:0048481	plant ovule development
GO:0030154	cell differentiation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Orthology

View orthology data for C09p75680.1_BnaDARv10-PA

Metabolic Model

View data from metabolic model for C09p75680.1_BnaDARv10-PA