C09p74830.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	C09p74830.1_BnaDARv10-RA
Unique Name	C09p74830.1_BnaDARv10-PA
Type	polypeptide
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)
Sequence length	156

Homology

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BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY69976.1 (BnaUnng03560D [Brassica napus])

HSP 1 Score: 313 bits (801), Expect = 1.190e-107
Identity = 152/155 (98.06%), Postives = 152/155 (98.06%), Query Frame = 0

Query:    1 MSGDPIVLTAPPHSARMMGWSCWICIPKGLSRVPLLKGQEIIQLTIFGPASFKLWKDEAFETWLTCTQKQTLPKTGFSILLFTCFHVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKVIRLFSPSALTL 155
            MSGDPIVLTAPPHSARMMGWSCWICIPKGLSRVPLLKGQEIIQ TI  PASFKLWKDEAFETWLTCTQKQTLPKTGFSILLFTCFHVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKVIRLFSPSALTL
Sbjct:    1 MSGDPIVLTAPPHSARMMGWSCWICIPKGLSRVPLLKGQEIIQPTIVDPASFKLWKDEAFETWLTCTQKQTLPKTGFSILLFTCFHVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKVIRLFSPSALTL 155

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BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3606128.1 (hypothetical protein DY000_02051660 [Brassica cretica])

HSP 1 Score: 119 bits (298), Expect = 2.680e-30
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 0

Query:   91 KPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKVIRLFSPSALTL 155
             PELVVQTEPSTDPYGPSIVDEALEAIVV RETLPCGLSVNRKRAERGLSQLKVIRLF+PSALTL
Sbjct:  163 NPELVVQTEPSTDPYGPSIVDEALEAIVV-RETLPCGLSVNRKRAERGLSQLKVIRLFNPSALTL 226

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BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: VDC84814.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 103 bits (257), Expect = 1.320e-25
Identity = 51/69 (73.91%), Postives = 52/69 (75.36%), Query Frame = 0

Query:    1 MSGDPIVLTAPPHSARMMGWSCWICIPKGLSRVPLLKGQEIIQLTIFG------PASFKLWKDEAFETW 63
            MSGDPIVLT  PHSARM GWSCWICIPKGLSRVPLLKGQ   Q  +F       PA FK WKDEAFETW
Sbjct:    1 MSGDPIVLTTSPHSARM-GWSCWICIPKGLSRVPLLKGQFSRQRELFNQPLLIDPARFKSWKDEAFETW 68

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BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: RID52757.1 (hypothetical protein BRARA_G00198 [Brassica rapa] >CDY46303.1 BnaA07g01980D [Brassica napus])

HSP 1 Score: 104 bits (260), Expect = 3.730e-25
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0

Query:   86 HVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKV 144
            +V +IKPELVVQTEP TDPYGPSIVDEALEAIVVS+ETLP GLSVNRKRAERGLSQLK+
Sbjct:   78 YVKSIKPELVVQTEPITDPYGPSIVDEALEAIVVSKETLPGGLSVNRKRAERGLSQLKI 136

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BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: VDC95497.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 104 bits (260), Expect = 3.730e-25
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0

Query:   86 HVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKV 144
            +V +IKPELVVQTEP TDPYGPSIVDEALEAIVVS+ETLP GLSVNRKRAERGLSQLK+
Sbjct:   78 YVKSIKPELVVQTEPITDPYGPSIVDEALEAIVVSKETLPGGLSVNRKRAERGLSQLKI 136

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BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009102256.1 (phosphopantetheine adenylyltransferase isoform X1 [Brassica rapa])

HSP 1 Score: 104 bits (260), Expect = 3.730e-25
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0

Query:   86 HVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKV 144
            +V +IKPELVVQTEP TDPYGPSIVDEALEAIVVS+ETLP GLSVNRKRAERGLSQLK+
Sbjct:   78 YVKSIKPELVVQTEPITDPYGPSIVDEALEAIVVSKETLPGGLSVNRKRAERGLSQLKI 136

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BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013652865.1 (phosphopantetheine adenylyltransferase-like [Brassica napus])

HSP 1 Score: 104 bits (260), Expect = 3.730e-25
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0

Query:   86 HVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKV 144
            +V +IKPELVVQTEP TDPYGPSIVDEALEAIVVS+ETLP GLSVNRKRAERGLSQLK+
Sbjct:   78 YVKSIKPELVVQTEPITDPYGPSIVDEALEAIVVSKETLPGGLSVNRKRAERGLSQLKI 136

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BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: CAA7022147.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 104 bits (260), Expect = 7.540e-25
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0

Query:   86 HVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKV 144
            +V +IKPELVVQTEP TDPYGPSIVDEALEAIVVS+ETLP GLSVNRKRAERGLSQLK+
Sbjct:  105 YVKSIKPELVVQTEPITDPYGPSIVDEALEAIVVSKETLPGGLSVNRKRAERGLSQLKI 163

[Close]

BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_018452214.1 (PREDICTED: phosphopantetheine adenylyltransferase-like [Raphanus sativus])

HSP 1 Score: 103 bits (257), Expect = 9.720e-25
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 0

Query:   86 HVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKV 144
            +V +IKPELVVQTEP TDPYGPSIVDE+LEAIVVS+ETLP GLSVNRKRAERGLSQLK+
Sbjct:   78 YVKSIKPELVVQTEPITDPYGPSIVDESLEAIVVSKETLPGGLSVNRKRAERGLSQLKI 136

[Close]

BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013595980.1 (PREDICTED: phosphopantetheine adenylyltransferase [Brassica oleracea var. oleracea])

HSP 1 Score: 103 bits (257), Expect = 1.050e-24
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 0

Query:   86 HVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKV 144
            +V +IKP+LVVQTEP TDPYGPSIVDEALEAIVVS+ETLP GLSVNRKRAERGLSQLK+
Sbjct:   78 YVKSIKPDLVVQTEPITDPYGPSIVDEALEAIVVSKETLPGGLSVNRKRAERGLSQLKI 136

The following BLAST results are available for this feature:

BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein

BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20

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POSITION

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Match Name	E-value	Identity	Description
CDY69976.1	1.190e-107	98.06	BnaUnng03560D [Brassica napus]	[more]
KAF3606128.1	2.680e-30	95.38	hypothetical protein DY000_02051660 [Brassica cret...	[more]
VDC84814.1	1.320e-25	73.91	unnamed protein product [Brassica oleracea]	[more]
RID52757.1	3.730e-25	88.14	hypothetical protein BRARA_G00198 [Brassica rapa] ...	[more]
VDC95497.1	3.730e-25	88.14	unnamed protein product [Brassica rapa]	[more]
XP_009102256.1	3.730e-25	88.14	phosphopantetheine adenylyltransferase isoform X1 ...	[more]
XP_013652865.1	3.730e-25	88.14	phosphopantetheine adenylyltransferase-like [Brass...	[more]
CAA7022147.1	7.540e-25	88.14	unnamed protein product [Microthlaspi erraticum]	[more]
XP_018452214.1	9.720e-25	86.44	PREDICTED: phosphopantetheine adenylyltransferase-...	[more]
XP_013595980.1	1.050e-24	86.44	PREDICTED: phosphopantetheine adenylyltransferase ...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006629	lipid metabolic process
biological_process	GO:0019915	lipid storage
biological_process	GO:0016310	phosphorylation
biological_process	GO:0080020	regulation of coenzyme A biosynthetic process
biological_process	GO:0009651	response to salt stress
cellular_component	GO:0005829	cytosol
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004140	dephospho-CoA kinase activity
molecular_function	GO:0004595	pantetheine-phosphate adenylyltransferase activity

InterPro

Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17

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POSITION

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	3.40.50.620	HUPs	coord: 83..150 e-value: 3.3E-10 score: 42.3
None	No IPR available	PANTHER	PTHR10695	DEPHOSPHO-COA KINASE-RELATED	coord: 1..152
None	No IPR available	PANTHER	PTHR10695:SF51	BNAUNNG03560D PROTEIN	coord: 1..152

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C09_BnaDARv10	contig	C09_BnaDARv10:65412246..65413116 - View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on Darmor-bzh OGS10 v10	2021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR	2021-04-17
Blast2GO on Darmor-bzh OGS10 v10	2021-04-17
Darmor-bzh OGS10 v10	2020-07-22

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
C09p74830.1_BnaDARv10-RA	C09p74830.1_BnaDARv10-RA	Brassica napus	mRNA	C09_BnaDARv10 65412246..65413116 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>C09p74830.1_BnaDARv10-PA ID=C09p74830.1_BnaDARv10-PA|Name=C09p74830.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=156bp
MSGDPIVLTAPPHSARMMGWSCWICIPKGLSRVPLLKGQEIIQLTIFGPA
SFKLWKDEAFETWLTCTQKQTLPKTGFSILLFTCFHVLAIKPELVVQTEP
STDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKVIRLFSP
SALTL.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014729	Rossmann-like_a/b/a_fold

Vocabulary: **Biological Process**
Term	Definition
GO:0016310	phosphorylation
GO:0006629	lipid metabolic process
GO:0009651	response to salt stress
GO:0080020	regulation of coenzyme A biosynthetic process
GO:0019915	lipid storage

Vocabulary: **Molecular Function**
Term	Definition
GO:0004595	pantetheine-phosphate adenylyltransferase activity
GO:0004140	dephospho-CoA kinase activity
GO:0005524	ATP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005829	cytosol

Orthology

View orthology data for C09p74830.1_BnaDARv10-PA

Metabolic Model

View data from metabolic model for C09p74830.1_BnaDARv10-PA