C09p69490.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	C09p69490.1_BnaDARv10-RA
Unique Name	C09p69490.1_BnaDARv10-PA
Type	polypeptide
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)
Sequence length	174

Homology

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BLAST of C09p69490.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2535988.1 (hypothetical protein F2Q68_00023126 [Brassica cretica])

HSP 1 Score: 357 bits (916), Expect = 1.350e-124
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0

Query:    1 MYSSRFIWPYGCHLMLKGTHLKSMVQRLRTYATATTPKPKAYSPTAEHGGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN 173
            MYSSRFIWPYGCHLMLKGTHLKSMVQRLRTYATATTPKPKAYSPTAEHGGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN
Sbjct:    1 MYSSRFIWPYGCHLMLKGTHLKSMVQRLRTYATATTPKPKAYSPTAEHGGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN 173

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BLAST of C09p69490.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34370.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 323 bits (828), Expect = 2.180e-111
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0

Query:   15 MLKGTHLKSMVQRLRTYATATTPKPKAYSPTAEHGGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN 173
            MLKGTHLKSMVQRLRTYATATTPKPKAYSPTAEHGGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN
Sbjct:    1 MLKGTHLKSMVQRLRTYATATTPKPKAYSPTAEHGGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN 159

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BLAST of C09p69490.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013643246.1 (uncharacterized protein LOC106348125 [Brassica napus] >XP_013743209.1 uncharacterized protein LOC106446080 [Brassica napus] >KAF2571854.1 hypothetical protein F2Q70_00006494 [Brassica cretica])

HSP 1 Score: 318 bits (814), Expect = 3.300e-109
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0

Query:   18 GTHLKSMVQRLRTYATATTPKPKAYSPTAEHGGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN 173
            GTHLKSMVQRLRTYATATTPKPKAYSPTAEHGGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN
Sbjct:    7 GTHLKSMVQRLRTYATATTPKPKAYSPTAEHGGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN 162

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BLAST of C09p69490.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2535978.1 (hypothetical protein F2Q68_00023128 [Brassica cretica] >KAF2571853.1 hypothetical protein F2Q70_00006497 [Brassica cretica])

HSP 1 Score: 313 bits (802), Expect = 4.630e-107
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0

Query:   18 GTHLKSMVQRLRTYATATTPKPKAYSPTAEHGGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN 173
            GTHLKSMVQRLRTYATATTPKPKAYSPTAE+GGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHV DFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN
Sbjct:   28 GTHLKSMVQRLRTYATATTPKPKAYSPTAEYGGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVQDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN 183

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BLAST of C09p69490.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013609946.1 (PREDICTED: uncharacterized protein LOC106316604 [Brassica oleracea var. oleracea])

HSP 1 Score: 309 bits (791), Expect = 1.060e-105
Identity = 152/156 (97.44%), Postives = 153/156 (98.08%), Query Frame = 0

Query:   18 GTHLKSMVQRLRTYATATTPKPKAYSPTAEHGGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN 173
            GTHLKSMVQRLRTYATATTPKPKAYSPTAE+GGQRPA TT ATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHV DFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN
Sbjct:    7 GTHLKSMVQRLRTYATATTPKPKAYSPTAEYGGQRPAATTKATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVQDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN 162

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BLAST of C09p69490.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3566019.1 (hypothetical protein DY000_02019557 [Brassica cretica])

HSP 1 Score: 305 bits (781), Expect = 2.340e-104
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0

Query:   24 MVQRLRTYATATTPKPKAYSPTAEHGGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN 173
            MVQRLRTYATATTPKPKAYSPTAEHGGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN
Sbjct:    1 MVQRLRTYATATTPKPKAYSPTAEHGGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN 150

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BLAST of C09p69490.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3505218.1 (hypothetical protein F2Q69_00045330 [Brassica cretica])

HSP 1 Score: 302 bits (773), Expect = 3.890e-103
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0

Query:   24 MVQRLRTYATATTPKPKAYSPTAEHGGQRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN 173
            MVQRLRTYATATTPKPKAYSPTAEHGGQR ATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN
Sbjct:    1 MVQRLRTYATATTPKPKAYSPTAEHGGQRQATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAAN 150

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BLAST of C09p69490.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD20583.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 291 bits (744), Expect = 1.500e-98
Identity = 147/159 (92.45%), Postives = 151/159 (94.97%), Query Frame = 0

Query:   15 MLKGTHLKSMVQRLRTYATATTPKPKAYSPTAEHGGQR-PATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAA 172
            MLKGTHLKSMVQRLR+YATA+T K KAYSPTAE+GGQR  ATTTT TKGDF PVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHV +FDKQDVIPDPIRKD FAHKPRAVTLKDVGVDPKMSAA
Sbjct:    1 MLKGTHLKSMVQRLRSYATASTSKSKAYSPTAEYGGQRRAATTTTGTKGDFTPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVQEFDKQDVIPDPIRKDQFAHKPRAVTLKDVGVDPKMSAA 159

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BLAST of C09p69490.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009122350.1 (uncharacterized protein LOC103847066 [Brassica rapa] >XP_013715313.1 uncharacterized protein LOC106419099 [Brassica napus] >XP_013715480.1 uncharacterized protein LOC106419269 [Brassica napus])

HSP 1 Score: 288 bits (738), Expect = 1.360e-97
Identity = 145/156 (92.95%), Postives = 149/156 (95.51%), Query Frame = 0

Query:   18 GTHLKSMVQRLRTYATATTPKPKAYSPTAEHGGQR-PATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAA 172
            GTHLKSMVQRLR+YATA+TPK KAYSPTAE+GGQR  ATTTT TKGDF PVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHV +FDKQDVIPDPIRKD FAHKPRAVTLKDVGVDPKMSAA
Sbjct:    7 GTHLKSMVQRLRSYATASTPKSKAYSPTAEYGGQRRAATTTTGTKGDFTPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVQEFDKQDVIPDPIRKDQFAHKPRAVTLKDVGVDPKMSAA 162

[Close]

BLAST of C09p69490.1_BnaDARv10-RA vs. GenBank_protein
Match: RID42638.1 (hypothetical protein BRARA_J02509 [Brassica rapa])

HSP 1 Score: 285 bits (730), Expect = 2.260e-96
Identity = 144/156 (92.31%), Postives = 148/156 (94.87%), Query Frame = 0

Query:   18 GTHLKSMVQRLRTYATATTPKPKAYSPTAEHGGQR-PATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDHFAHKPRAVTLKDVGVDPKMSAA 172
            GTHLKSMVQRLR+YATA+T K KAYSPTAE+GGQR  ATTTT TKGDF PVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHV +FDKQDVIPDPIRKD FAHKPRAVTLKDVGVDPKMSAA
Sbjct:    7 GTHLKSMVQRLRSYATASTSKSKAYSPTAEYGGQRRAATTTTGTKGDFTPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKKTRETVPEVEDPDRVINEADRLANRSWFRKLAHVQEFDKQDVIPDPIRKDQFAHKPRAVTLKDVGVDPKMSAA 162

The following BLAST results are available for this feature:

BLAST of C09p69490.1_BnaDARv10-RA vs. GenBank_protein

BLAST of C09p69490.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20

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POSITION

0


Match Name	E-value	Identity	Description
KAF2535988.1	1.350e-124	100.00	hypothetical protein F2Q68_00023126 [Brassica cret...	[more]
VDD34370.1	2.180e-111	100.00	unnamed protein product [Brassica oleracea]	[more]
XP_013643246.1	3.300e-109	100.00	uncharacterized protein LOC106348125 [Brassica nap...	[more]
KAF2535978.1	4.630e-107	98.72	hypothetical protein F2Q68_00023128 [Brassica cret...	[more]
XP_013609946.1	1.060e-105	97.44	PREDICTED: uncharacterized protein LOC106316604 [B...	[more]
KAF3566019.1	2.340e-104	100.00	hypothetical protein DY000_02019557 [Brassica cret...	[more]
KAF3505218.1	3.890e-103	99.33	hypothetical protein F2Q69_00045330 [Brassica cret...	[more]
VDD20583.1	1.500e-98	92.45	unnamed protein product [Brassica rapa]	[more]
XP_009122350.1	1.360e-97	92.95	uncharacterized protein LOC103847066 [Brassica rap...	[more]
RID42638.1	2.260e-96	92.31	hypothetical protein BRARA_J02509 [Brassica rapa]	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17

ZOOM

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POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..57
None	No IPR available	PANTHER	PTHR33919	OS09G0127700 PROTEIN	coord: 19..168
None	No IPR available	PANTHER	PTHR33919:SF11	PROTEIN, PUTATIVE-RELATED	coord: 19..168
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 90..173
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 67..89
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..66
None	No IPR available	TMHMM	TMhelix		coord: 67..89

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C09_BnaDARv10	contig	C09_BnaDARv10:62517291..62517812 + View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on Darmor-bzh OGS10 v10	2021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR	2021-04-17
Blast2GO on Darmor-bzh OGS10 v10	2021-04-17
Darmor-bzh OGS10 v10	2020-07-22

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
C09p69490.1_BnaDARv10-RA	C09p69490.1_BnaDARv10-RA	Brassica napus	mRNA	C09_BnaDARv10 62517291..62517812 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>C09p69490.1_BnaDARv10-PA ID=C09p69490.1_BnaDARv10-PA|Name=C09p69490.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=174bp
MYSSRFIWPYGCHLMLKGTHLKSMVQRLRTYATATTPKPKAYSPTAEHGG
QRPATTTTATKGDFMPVYVSIGMISLSVSFGLYTAYLHLHENPSVRVNKK
TRETVPEVEDPDRVINEADRLANRSWFRKLAHVLDFDKQDVIPDPIRKDH
FAHKPRAVTLKDVGVDPKMSAAN.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Orthology

View orthology data for C09p69490.1_BnaDARv10-PA

Metabolic Model

View data from metabolic model for C09p69490.1_BnaDARv10-PA