C09p69280.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	C09p69280.1_BnaDARv10-RA
Unique Name	C09p69280.1_BnaDARv10-PA
Type	polypeptide
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)
Sequence length	150

Homology

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BLAST of C09p69280.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013610800.1 (PREDICTED: basic leucine zipper 19 [Brassica oleracea var. oleracea] >XP_013746785.1 basic leucine zipper 19 [Brassica napus] >VDD34349.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 291 bits (745), Expect = 2.640e-99
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0

Query:    1 MSEPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQGEIEANTAEIERLKKKMAHMI 149
            MSEPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQGEIEANTAEIERLKKKMAHMI
Sbjct:    1 MSEPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQGEIEANTAEIERLKKKMAHMI 149

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BLAST of C09p69280.1_BnaDARv10-RA vs. GenBank_protein
Match: RID42620.1 (hypothetical protein BRARA_J02491 [Brassica rapa] >VDD20545.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 291 bits (744), Expect = 3.740e-99
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 0

Query:    1 MSEPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQGEIEANTAEIERLKKKMAHMI 149
            MSEPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQY+DDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQGEIEANTAEIERLKKKMAHMI
Sbjct:    1 MSEPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYIDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQGEIEANTAEIERLKKKMAHMI 149

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BLAST of C09p69280.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009122367.1 (basic leucine zipper 19 [Brassica rapa] >XP_013715347.1 basic leucine zipper 19-like [Brassica napus] >XP_013715349.1 basic leucine zipper 19-like [Brassica napus])

HSP 1 Score: 290 bits (741), Expect = 1.070e-98
Identity = 147/149 (98.66%), Postives = 149/149 (100.00%), Query Frame = 0

Query:    1 MSEPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQGEIEANTAEIERLKKKMAHMI 149
            MS+PSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQY+DDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQGEIEANTAEIERLKKKMAHMI
Sbjct:    1 MSDPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYIDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQGEIEANTAEIERLKKKMAHMI 149

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BLAST of C09p69280.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_018443367.1 (PREDICTED: basic leucine zipper 19 [Raphanus sativus])

HSP 1 Score: 259 bits (662), Expect = 1.190e-86
Identity = 131/149 (87.92%), Postives = 140/149 (93.96%), Query Frame = 0

Query:    1 MSEPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQGEIEANTAEIERLKKKMAHMI 149
            MS+PSFPVPTSFQVSN GSQ EEKK GY+NYEVEPGFTIRLRQNIDPAMDPKKL+RIVSNRVAAQKSRWKKLQY+D+LV KSRDL WQV+MLRSQVEMASEQKQCLERE+MELKECM+GW+  FIS QGEIEANTAEIERLKKKMA MI
Sbjct:    1 MSDPSFPVPTSFQVSNGGSQEEEKKVGYVNYEVEPGFTIRLRQNIDPAMDPKKLRRIVSNRVAAQKSRWKKLQYIDNLVTKSRDLQWQVNMLRSQVEMASEQKQCLEREQMELKECMSGWLHYFISSQGEIEANTAEIERLKKKMARMI 149

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BLAST of C09p69280.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3504476.1 (hypothetical protein F2Q69_00045306 [Brassica cretica])

HSP 1 Score: 254 bits (648), Expect = 8.590e-85
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query:    1 MSEPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQG 129
            MSEPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQG
Sbjct:    1 MSEPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQG 129

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BLAST of C09p69280.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3564873.1 (hypothetical protein DY000_02019533 [Brassica cretica])

HSP 1 Score: 254 bits (648), Expect = 6.020e-83
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query:    1 MSEPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQG 129
            MSEPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQG
Sbjct:  128 MSEPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQG 256

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BLAST of C09p69280.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_006399196.1 (basic leucine zipper 6 [Eutrema salsugineum] >ESQ40649.1 hypothetical protein EUTSA_v10014931mg [Eutrema salsugineum])

HSP 1 Score: 234 bits (596), Expect = 1.370e-76
Identity = 120/149 (80.54%), Postives = 135/149 (90.60%), Query Frame = 0

Query:    1 MSEPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQGEIEANTAEIERLKKKMAHMI 149
            MSEP FPVP SFQVSN GSQ EEKK GY+NYEVEPGFTIRLRQNIDPAMDPK+LKRI+SNRVAAQKSRWKKLQYV+DLVKKS++L+ QVS+LR QV MASEQK+CLE E+MELKEC++ W Q FIS++GEIEA  AEIERLKKKMA+MI
Sbjct:    1 MSEPRFPVPRSFQVSNSGSQEEEKKAGYVNYEVEPGFTIRLRQNIDPAMDPKRLKRILSNRVAAQKSRWKKLQYVEDLVKKSKELHRQVSVLRCQVGMASEQKRCLEDEQMELKECISAWFQHFISNEGEIEAYRAEIERLKKKMANMI 149

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BLAST of C09p69280.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_002873298.1 (basic leucine zipper 34 [Arabidopsis lyrata subsp. lyrata] >EFH49557.1 DNA binding protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 170 bits (430), Expect = 2.640e-51
Identity = 92/143 (64.34%), Postives = 111/143 (77.62%), Query Frame = 0

Query:    5 SFPV-PTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQGEIEANTAEIERLKKKMA 146
            SFPV  TSF VS  GSQ  EKK GY++YEVEPGFTIR+R +IDP  DPKKLKRI+SNRVAAQKSRWKK+QY+D LVK+S +L  QVSMLRS++ +ASE K+ LE E+ +LKEC++  +Q  I   G IE   AEIERLKK +A
Sbjct:    2 SFPVVATSFGVSQSGSQAGEKKGGYVHYEVEPGFTIRMRHDIDPTTDPKKLKRIISNRVAAQKSRWKKVQYIDALVKRSMELQGQVSMLRSELAIASEHKRRLENEQRQLKECISARVQHCIDSDGVIEECKAEIERLKKNLA 144

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BLAST of C09p69280.1_BnaDARv10-RA vs. GenBank_protein
Match: OAO89878.1 (hypothetical protein AXX17_AT5G06820 [Arabidopsis thaliana] >CAA0401188.1 unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 168 bits (425), Expect = 1.520e-50
Identity = 91/143 (63.64%), Postives = 110/143 (76.92%), Query Frame = 0

Query:    5 SFPV-PTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQGEIEANTAEIERLKKKMA 146
            SFPV  TSF VS  GSQ  +KK GY+NYEVEPGFTIR+RQNIDP  DPKKLKRI+SNRVAAQKSRWKK+QY+D LVK+S +L  +VS LRSQ+ + SEQK+ LE E+ +LKEC++  +Q  I+  G IE    EIERLK  +A
Sbjct:    2 SFPVVATSFGVSQSGSQAGKKKGGYVNYEVEPGFTIRMRQNIDPTTDPKKLKRIISNRVAAQKSRWKKVQYLDALVKRSMELQREVSELRSQLAITSEQKRYLENEQRQLKECISARVQHCINSDGVIEEYKTEIERLKTNLA 144

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BLAST of C09p69280.1_BnaDARv10-RA vs. GenBank_protein
Match: NP_196333.2 (Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana] >AAX59054.1 activator of spomin LUC3 [Arabidopsis thaliana] >AED91116.1 Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana] >VYS66130.1 unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 165 bits (417), Expect = 2.490e-49
Identity = 90/143 (62.94%), Postives = 109/143 (76.22%), Query Frame = 0

Query:    5 SFPV-PTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMDPKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREKMELKECMAGWIQRFISDQGEIEANTAEIERLKKKMA 146
            SFPV  TSF VS  GSQ  +KK GY+NYEVEPGFTIR+RQNIDP  DPK LKRI+SNRVAAQKSRWKK+QY+D LVK+S +L  +VS LRSQ+ + SEQK+ LE E+ +LKEC++  +Q  I+  G IE    EIERLK  +A
Sbjct:    2 SFPVVATSFGVSQSGSQAGKKKGGYVNYEVEPGFTIRMRQNIDPTTDPKILKRIISNRVAAQKSRWKKVQYLDALVKRSMELQREVSELRSQLAITSEQKRYLENEQRQLKECISARVQHCINSDGVIEEYKTEIERLKTNLA 144

The following BLAST results are available for this feature:

BLAST of C09p69280.1_BnaDARv10-RA vs. GenBank_protein

BLAST of C09p69280.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20

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POSITION

0


Match Name	E-value	Identity	Description
XP_013610800.1	2.640e-99	100.00	PREDICTED: basic leucine zipper 19 [Brassica olera...	[more]
RID42620.1	3.740e-99	99.33	hypothetical protein BRARA_J02491 [Brassica rapa] ...	[more]
XP_009122367.1	1.070e-98	98.66	basic leucine zipper 19 [Brassica rapa] >XP_013715...	[more]
XP_018443367.1	1.190e-86	87.92	PREDICTED: basic leucine zipper 19 [Raphanus sativ...	[more]
KAF3504476.1	8.590e-85	100.00	hypothetical protein F2Q69_00045306 [Brassica cret...	[more]
KAF3564873.1	6.020e-83	100.00	hypothetical protein DY000_02019533 [Brassica cret...	[more]
XP_006399196.1	1.370e-76	80.54	basic leucine zipper 6 [Eutrema salsugineum] >ESQ4...	[more]
XP_002873298.1	2.640e-51	64.34	basic leucine zipper 34 [Arabidopsis lyrata subsp....	[more]
OAO89878.1	1.520e-50	63.64	hypothetical protein AXX17_AT5G06820 [Arabidopsis ...	[more]
NP_196333.2	2.490e-49	62.94	Basic-leucine zipper (bZIP) transcription factor f...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity

InterPro

Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17

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POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 89..116
None	No IPR available	GENE3D	1.20.5.170		coord: 50..118 e-value: 4.1E-8 score: 35.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR46391	BASIC LEUCINE ZIPPER 34	coord: 2..143
None	No IPR available	PANTHER	PTHR46391:SF13	ACTIVATOR OF SPOMIN LUC3	coord: 2..143
None	No IPR available	SUPERFAMILY	57959	Leucine zipper domain	coord: 52..106
IPR004827	Basic-leucine zipper domain	SMART	SM00338	brlzneu	coord: 48..112 e-value: 6.6E-10 score: 48.9
IPR004827	Basic-leucine zipper domain	PFAM	PF00170	bZIP_1	coord: 52..110 e-value: 2.0E-8 score: 34.2
IPR004827	Basic-leucine zipper domain	PROSITE	PS00036	BZIP_BASIC	coord: 55..70
IPR004827	Basic-leucine zipper domain	PROSITE	PS50217	BZIP	coord: 50..113 score: 8.944
IPR044759	RF2-like transcription factor, bZIP domain	CDD	cd14703	bZIP_plant_RF2	coord: 53..104 e-value: 1.78586E-10 score: 51.4216

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C09_BnaDARv10	contig	C09_BnaDARv10:62384395..62385091 - View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on Darmor-bzh OGS10 v10	2021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR	2021-04-17
Blast2GO on Darmor-bzh OGS10 v10	2021-04-17
Darmor-bzh OGS10 v10	2020-07-22

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
C09p69280.1_BnaDARv10-RA	C09p69280.1_BnaDARv10-RA	Brassica napus	mRNA	C09_BnaDARv10 62384395..62385091 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>C09p69280.1_BnaDARv10-PA ID=C09p69280.1_BnaDARv10-PA|Name=C09p69280.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=150bp
MSEPSFPVPTSFQVSNDGSQVEEKKTGYLNYEVEPGFTIRLRQNIDPAMD
PKKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMAS
EQKQCLEREKMELKECMAGWIQRFISDQGEIEANTAEIERLKKKMAHMI.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR044759	bZIP_RF2
IPR004827	bZIP

Vocabulary: **Biological Process**
Term	Definition
GO:0045893	positive regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	DNA-binding transcription factor activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Orthology

View orthology data for C09p69280.1_BnaDARv10-PA

Metabolic Model

View data from metabolic model for C09p69280.1_BnaDARv10-PA