C09p68890.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	C09p68890.1_BnaDARv10-RA
Unique Name	C09p68890.1_BnaDARv10-PA
Type	polypeptide
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)
Sequence length	378

Homology

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BLAST of C09p68890.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009122414.1 (glycerophosphodiester phosphodiesterase GDPD6 isoform X2 [Brassica rapa])

HSP 1 Score: 751 bits (1940), Expect = 5.860e-273
Identity = 370/377 (98.14%), Postives = 373/377 (98.94%), Query Frame = 0

Query:    1 VRFSRCSLADCLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPFNVAHRGANGEFPEETAPSYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDATRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ 377
            VRFS CS A CLPLLLLSLLIAECASRPLYTLPSLAK+GTKKPLQTSRPFNVAHRGANGEFPEETAP+YMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDA RVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELT+PLPKLQ
Sbjct:   56 VRFSVCSFAGCLPLLLLSLLIAECASRPLYTLPSLAKAGTKKPLQTSRPFNVAHRGANGEFPEETAPAYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDAPRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTAPLPKLQ 432

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BLAST of C09p68890.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD20484.1 (unnamed protein product, partial [Brassica rapa])

HSP 1 Score: 748 bits (1931), Expect = 1.550e-272
Identity = 368/374 (98.40%), Postives = 371/374 (99.20%), Query Frame = 0

Query:    4 SRCSLADCLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPFNVAHRGANGEFPEETAPSYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDATRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ 377
            S CS ADCLPLLLLSLLIAECASRPLYTLPSLAK+GTKKPLQTSRPFNVAHRGANGEFPEETAP+YMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDA RVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELT+PLPKLQ
Sbjct:    1 SICSFADCLPLLLLSLLIAECASRPLYTLPSLAKAGTKKPLQTSRPFNVAHRGANGEFPEETAPAYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDAPRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTAPLPKLQ 374

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BLAST of C09p68890.1_BnaDARv10-RA vs. GenBank_protein
Match: RID42584.1 (hypothetical protein BRARA_J02458 [Brassica rapa])

HSP 1 Score: 748 bits (1931), Expect = 1.380e-271
Identity = 369/377 (97.88%), Postives = 371/377 (98.41%), Query Frame = 0

Query:    1 VRFSRCSLADCLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPFNVAHRGANGEFPEETAPSYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDATRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ 377
            VRFS CS A CLPLLLLSLLIAECASRPLYTLPSLAK+GTKKPLQTSRPFNVAHRGANGEFPEETAP+YMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDA RVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTY EITSDKYLDYIKPYVVGIGPWKDTIVPV NNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ
Sbjct:   56 VRFSVCSFAGCLPLLLLSLLIAECASRPLYTLPSLAKAGTKKPLQTSRPFNVAHRGANGEFPEETAPAYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDAPRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYNEITSDKYLDYIKPYVVGIGPWKDTIVPVSNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ 432

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BLAST of C09p68890.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34312.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 740 bits (1910), Expect = 1.890e-269
Identity = 365/367 (99.46%), Postives = 365/367 (99.46%), Query Frame = 0

Query:   11 CLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPFNVAHRGANGEFPEETAPSYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDATRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ 377
            CLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPFNVAHRGANGEFPEETAPSYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKF IITLDEYIAIALDATRV GIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ
Sbjct:    1 CLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPFNVAHRGANGEFPEETAPSYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFQIITLDEYIAIALDATRVAGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ 367

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BLAST of C09p68890.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013611323.1 (PREDICTED: glycerophosphodiester phosphodiesterase GDPD6 [Brassica oleracea var. oleracea] >KAF3501002.1 hypothetical protein F2Q69_00045268 [Brassica cretica])

HSP 1 Score: 740 bits (1910), Expect = 2.380e-269
Identity = 365/367 (99.46%), Postives = 365/367 (99.46%), Query Frame = 0

Query:   11 CLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPFNVAHRGANGEFPEETAPSYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDATRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ 377
            CLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPFNVAHRGANGEFPEETAPSYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKF IITLDEYIAIALDATRV GIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ
Sbjct:    7 CLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPFNVAHRGANGEFPEETAPSYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFQIITLDEYIAIALDATRVAGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ 373

[Close]

BLAST of C09p68890.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3567117.1 (hypothetical protein DY000_02019495 [Brassica cretica])

HSP 1 Score: 739 bits (1909), Expect = 3.370e-269
Identity = 364/367 (99.18%), Postives = 365/367 (99.46%), Query Frame = 0

Query:   11 CLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPFNVAHRGANGEFPEETAPSYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDATRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ 377
            CLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPFNVAHRGANGEFPEETAPSYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDATRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSP VFLIDDVTILTEDTNKTYAEITSD YLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQE+TSPLPKLQ
Sbjct:    7 CLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPFNVAHRGANGEFPEETAPSYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDATRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPNVFLIDDVTILTEDTNKTYAEITSDAYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQEMTSPLPKLQ 373

[Close]

BLAST of C09p68890.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009122415.1 (glycerophosphodiester phosphodiesterase GDPD6 isoform X4 [Brassica rapa])

HSP 1 Score: 739 bits (1907), Expect = 6.560e-269
Identity = 363/367 (98.91%), Postives = 366/367 (99.73%), Query Frame = 0

Query:   11 CLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPFNVAHRGANGEFPEETAPSYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDATRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ 377
            CLPLLLLSLLIAECASRPLYTLPSLAK+GTKKPLQTSRPFNVAHRGANGEFPEETAP+YMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDA RVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELT+PLPKLQ
Sbjct:    6 CLPLLLLSLLIAECASRPLYTLPSLAKAGTKKPLQTSRPFNVAHRGANGEFPEETAPAYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDAPRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTAPLPKLQ 372

[Close]

BLAST of C09p68890.1_BnaDARv10-RA vs. GenBank_protein
Match: BAF81519.1 (glycerophosphodiester phosphodiesterase [Brassica rapa])

HSP 1 Score: 739 bits (1907), Expect = 6.560e-269
Identity = 363/367 (98.91%), Postives = 366/367 (99.73%), Query Frame = 0

Query:   11 CLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPFNVAHRGANGEFPEETAPSYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDATRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ 377
            CLPLLLLSLLIAECASRPLYTLPSLAK+GTKKPLQTSRPFNVAHRGANGEFPEETAP+YMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDA RVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELT+PLPKLQ
Sbjct:    6 CLPLLLLSLLIAECASRPLYTLPSLAKAGTKKPLQTSRPFNVAHRGANGEFPEETAPAYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDAPRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTAPLPKLQ 372

[Close]

BLAST of C09p68890.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_033138665.1 (glycerophosphodiester phosphodiesterase GDPD6 isoform X1 [Brassica rapa])

HSP 1 Score: 739 bits (1908), Expect = 9.640e-268
Identity = 370/398 (92.96%), Postives = 373/398 (93.72%), Query Frame = 0

Query:    1 VRFSRCSLADCLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPFNVAHRGANGEFPEETAPSYM---------------------RAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDATRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ 377
            VRFS CS A CLPLLLLSLLIAECASRPLYTLPSLAK+GTKKPLQTSRPFNVAHRGANGEFPEETAP+YM                     RAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDA RVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELT+PLPKLQ
Sbjct:   56 VRFSVCSFAGCLPLLLLSLLIAECASRPLYTLPSLAKAGTKKPLQTSRPFNVAHRGANGEFPEETAPAYMVLHPFTKLCPVSLRPMYLLLQRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDAPRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTAPLPKLQ 453

[Close]

BLAST of C09p68890.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_022549446.1 (glycerophosphodiester phosphodiesterase GDPD6 isoform X2 [Brassica napus])

HSP 1 Score: 738 bits (1904), Expect = 1.860e-267
Identity = 367/378 (97.09%), Postives = 369/378 (97.62%), Query Frame = 0

Query:    1 VRFSRCSLADCLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPFNVAHRGANGEFPEETAPSYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDATRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTNK-TYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ 377
            VRFS CS ADCLPLLLLSLLIAECASRPLYTLPSLAK+GTKKPLQTSRPFNVAHRGANGEFPEETAP+YMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKR YEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDA RVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDT   TY EITSDKYLDYIKPYVVGIGPWKDTIVPV NNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ
Sbjct:   56 VRFSICSFADCLPLLLLSLLIAECASRPLYTLPSLAKAGTKKPLQTSRPFNVAHRGANGEFPEETAPAYMRAIEEGADFIESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRAYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDAPRVVGIYPEIKNPVFINQQVKWADGKKFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTILTEDTFFFTYNEITSDKYLDYIKPYVVGIGPWKDTIVPVSNNRLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKIGVDGLFTDFTGSLHNFQELTSPLPKLQ 433

The following BLAST results are available for this feature:

BLAST of C09p68890.1_BnaDARv10-RA vs. GenBank_protein

BLAST of C09p68890.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
XP_009122414.1	5.860e-273	98.14	glycerophosphodiester phosphodiesterase GDPD6 isof...	[more]
VDD20484.1	1.550e-272	98.40	unnamed protein product, partial [Brassica rapa]	[more]
RID42584.1	1.380e-271	97.88	hypothetical protein BRARA_J02458 [Brassica rapa]	[more]
VDD34312.1	1.890e-269	99.46	unnamed protein product, partial [Brassica olerace...	[more]
XP_013611323.1	2.380e-269	99.46	PREDICTED: glycerophosphodiester phosphodiesterase...	[more]
KAF3567117.1	3.370e-269	99.18	hypothetical protein DY000_02019495 [Brassica cret...	[more]
XP_009122415.1	6.560e-269	98.91	glycerophosphodiester phosphodiesterase GDPD6 isof...	[more]
BAF81519.1	6.560e-269	98.91	glycerophosphodiester phosphodiesterase [Brassica ...	[more]
XP_033138665.1	9.640e-268	92.96	glycerophosphodiester phosphodiesterase GDPD6 isof...	[more]
XP_022549446.1	1.860e-267	97.09	glycerophosphodiester phosphodiesterase GDPD6 isof...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006071	glycerol metabolic process
biological_process	GO:0006629	lipid metabolic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005773	vacuole
molecular_function	GO:0008889	glycerophosphodiester phosphodiesterase activity

InterPro

Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17

ZOOM

x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030395	Glycerophosphodiester phosphodiesterase domain	PFAM	PF03009	GDPD	coord: 54..361 e-value: 4.1E-72 score: 243.0
IPR030395	Glycerophosphodiester phosphodiesterase domain	PROSITE	PS51704	GP_PDE	coord: 49..367 score: 34.191
IPR017946	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	GENE3D	3.20.20.190	Phosphatidylinositol (PI) phosphodiesterase	coord: 47..366 e-value: 2.8E-86 score: 292.0
IPR017946	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	SUPERFAMILY	51695	PLC-like phosphodiesterases	coord: 48..365
None	No IPR available	PANTHER	PTHR43620:SF30	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPD6	coord: 10..376
None	No IPR available	PANTHER	PTHR43620	GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE	coord: 10..376
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..26
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 22..26
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 27..377
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..10
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 11..21
None	No IPR available	CDD	cd08602	GDPD_ScGlpQ1_like	coord: 49..360 e-value: 0.0 score: 506.066
None	No IPR available	SIGNALP_GRAM_NEGATIVE	SignalP-noTM	SignalP-noTM	coord: 1..22 score: 0.614
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..26 score: 0.83
None	No IPR available	SIGNALP_GRAM_POSITIVE	SignalP-TM	SignalP-TM	coord: 1..14 score: 0.461

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C09_BnaDARv10	contig	C09_BnaDARv10:62222527..62224170 + View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on Darmor-bzh OGS10 v10	2021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR	2021-04-17
Blast2GO on Darmor-bzh OGS10 v10	2021-04-17
Darmor-bzh OGS10 v10	2020-07-22

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
C09p68890.1_BnaDARv10-RA	C09p68890.1_BnaDARv10-RA	Brassica napus	mRNA	C09_BnaDARv10 62222527..62224170 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>C09p68890.1_BnaDARv10-PA ID=C09p68890.1_BnaDARv10-PA|Name=C09p68890.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=378bp
VRFSRCSLADCLPLLLLSLLIAECASRPLYTLPSLAKSGTKKPLQTSRPF
NVAHRGANGEFPEETAPSYMRAIEEGADFIESDILSTKDGVLICHHDVNL
DDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELKTLGAKQRYPF
RDQQYNGKFPIITLDEYIAIALDATRVVGIYPEIKNPVFINQQVKWADGK
KFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPK
VFLIDDVTILTEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNN
RLTTPTDLVARAHSRNLQVHPYTYRNENQFLHSGFHQDAYLEYDYWINKI
GVDGLFTDFTGSLHNFQELTSPLPKLQ.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR017946	PLC-like_Pdiesterase_TIM-brl
IPR030395	GP_PDE_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0005773	vacuole
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008889	glycerophosphodiester phosphodiesterase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006629	lipid metabolic process
GO:0006071	glycerol metabolic process

Orthology

View orthology data for C09p68890.1_BnaDARv10-PA

Metabolic Model

View data from metabolic model for C09p68890.1_BnaDARv10-PA