C09p68750.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	C09p68750.1_BnaDARv10-RA
Unique Name	C09p68750.1_BnaDARv10-PA
Type	polypeptide
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)
Sequence length	167

Homology

[Close]

BLAST of C09p68750.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013600317.1 (PREDICTED: protein Dr1 homolog [Brassica oleracea var. oleracea] >XP_013600318.1 PREDICTED: protein Dr1 homolog [Brassica oleracea var. oleracea] >XP_013612243.1 PREDICTED: protein Dr1 homolog [Brassica oleracea var. oleracea] >XP_013612244.1 PREDICTED: protein Dr1 homolog [Brassica oleracea var. oleracea] >XP_013612245.1 PREDICTED: protein Dr1 homolog [Brassica oleracea var. oleracea] >XP_013612247.1 PREDICTED: protein Dr1 homolog [Brassica oleracea var. oleracea] >XP_013730175.1 protein Dr1 homolog [Brassica napus] >XP_013730182.1 protein Dr1 homolog [Brassica napus] >VDD34299.1 unnamed protein product [Brassica oleracea] >CDY21520.1 BnaC09g47720D [Brassica napus])

HSP 1 Score: 283 bits (723), Expect = 2.130e-95
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0

Query:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARXXXXXXXXXXXXXXXXDQEQQLDTQQSNPQS 166
            MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARXXXXXXXXXXXXXXXXDQEQQLDTQQSNPQS
Sbjct:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARXXXXXXXXXXXXXXXXDQEQQLDTQQSNPQS 166

[Close]

BLAST of C09p68750.1_BnaDARv10-RA vs. GenBank_protein
Match: AHI95686.1 (transcription factor subunit NF-YB12 [Brassica napus])

HSP 1 Score: 279 bits (713), Expect = 7.130e-94
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0

Query:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARXXXXXXXXXXXXXXXXDQEQQLDTQQSNPQS 166
            MDPMDIVGKSKEDASLPKATMTKIIKEML ADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARXXXXXXXXXXXXXXXXDQEQQLDTQQSNPQS
Sbjct:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLLADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARXXXXXXXXXXXXXXXXDQEQQLDTQQSNPQS 166

[Close]

BLAST of C09p68750.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2574199.1 (hypothetical protein F2Q70_00006463 [Brassica cretica] >KAF3496624.1 hypothetical protein DY000_02051942 [Brassica cretica])

HSP 1 Score: 278 bits (712), Expect = 9.780e-94
Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 0

Query:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARXXXXXXXXXXXXXXXXDQEQQLDTQQSNPQS 166
            MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARXXXXXXXXXXXXX   DQEQQLDTQQSNPQS
Sbjct:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARXXXXXXXXXXXXXQP-DQEQQLDTQQSNPQS 165

[Close]

BLAST of C09p68750.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3503369.1 (hypothetical protein F2Q69_00045254 [Brassica cretica])

HSP 1 Score: 277 bits (709), Expect = 2.710e-93
Identity = 149/166 (89.76%), Postives = 150/166 (90.36%), Query Frame = 0

Query:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARXXXXXXXXXXXXXXXXDQEQQLDTQQSNPQS 166
            MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEAR                D+EQQLDTQQSNPQS
Sbjct:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARARMNGGGGVSVPQP--DEEQQLDTQQSNPQS 164

[Close]

BLAST of C09p68750.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_018443876.1 (PREDICTED: protein Dr1 homolog [Raphanus sativus])

HSP 1 Score: 267 bits (683), Expect = 2.480e-89
Identity = 147/168 (87.50%), Postives = 149/168 (88.69%), Query Frame = 0

Query:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARXXXXXXXXXXXXXXXXDQEQQLD--TQQSNPQS 166
            MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQH+YETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEAR                DQEQQ+D  TQQSN QS
Sbjct:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARARMNGGVSIPQP----DQEQQVDDNTQQSNLQS 164

[Close]

BLAST of C09p68750.1_BnaDARv10-RA vs. GenBank_protein
Match: CAA7026995.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 264 bits (675), Expect = 3.470e-88
Identity = 143/166 (86.14%), Postives = 147/166 (88.55%), Query Frame = 0

Query:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARXXXXXXXXXXXXXXXXDQEQQLDTQQSNPQS 166
            MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQH+YETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEAR                 Q +QL+TQQS+ QS
Sbjct:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARARMNGGVSVP-------QPEQLETQQSSLQS 159

[Close]

BLAST of C09p68750.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013619027.1 (PREDICTED: protein Dr1 homolog [Brassica oleracea var. oleracea] >XP_013674614.1 protein Dr1 homolog [Brassica napus])

HSP 1 Score: 263 bits (672), Expect = 1.060e-87
Identity = 142/166 (85.54%), Postives = 145/166 (87.35%), Query Frame = 0

Query:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARXXXXXXXXXXXXXXXXDQEQQLDTQQSNPQS 166
            MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKAL VLGFGEYVEEVY+AYEQH+YETMQDSQRSVKMN+GAEMTEEEAAAEQQRMFAEAR                  EQQLDTQQ N QS
Sbjct:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALHVLGFGEYVEEVYSAYEQHKYETMQDSQRSVKMNTGAEMTEEEAAAEQQRMFAEARARMNGGGVSVPQP-----EQQLDTQQPNLQS 161

[Close]

BLAST of C09p68750.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_010452796.1 (PREDICTED: protein Dr1 homolog [Camelina sativa])

HSP 1 Score: 263 bits (671), Expect = 1.560e-87
Identity = 142/166 (85.54%), Postives = 147/166 (88.55%), Query Frame = 0

Query:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARXXXXXXXXXXXXXXXXDQEQQLDTQQSNPQS 166
            MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQH+YETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEAR                +Q+Q  +TQQ+N QS
Sbjct:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARARMNGGVSVPQP----EQQQLEETQQTNLQS 162

[Close]

BLAST of C09p68750.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009122430.1 (protein Dr1 homolog [Brassica rapa] >XP_013715273.1 protein Dr1 homolog [Brassica napus] >XP_022549450.1 protein Dr1 homolog [Brassica napus] >RID42571.1 hypothetical protein BRARA_J02445 [Brassica rapa] >VDD20458.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 262 bits (669), Expect = 3.610e-87
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0

Query:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEAR 135
            MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEAR
Sbjct:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEAR 135

[Close]

BLAST of C09p68750.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_006399306.1 (protein Dr1 homolog [Eutrema salsugineum] >ESQ40759.1 hypothetical protein EUTSA_v10014894mg [Eutrema salsugineum])

HSP 1 Score: 261 bits (667), Expect = 5.950e-87
Identity = 142/166 (85.54%), Postives = 145/166 (87.35%), Query Frame = 0

Query:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARXXXXXXXXXXXXXXXXDQEQQLDTQQSNPQS 166
            MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQH+YETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEAR                  EQ  +TQQ+N QS
Sbjct:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKYETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARARMNGGVSVPQP------EQLEETQQTNLQS 160

The following BLAST results are available for this feature:

BLAST of C09p68750.1_BnaDARv10-RA vs. GenBank_protein

BLAST of C09p68750.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
XP_013600317.1	2.130e-95	100.00	PREDICTED: protein Dr1 homolog [Brassica oleracea ...	[more]
AHI95686.1	7.130e-94	99.40	transcription factor subunit NF-YB12 [Brassica nap...	[more]
KAF2574199.1	9.780e-94	98.19	hypothetical protein F2Q70_00006463 [Brassica cret...	[more]
KAF3503369.1	2.710e-93	89.76	hypothetical protein F2Q69_00045254 [Brassica cret...	[more]
XP_018443876.1	2.480e-89	87.50	PREDICTED: protein Dr1 homolog [Raphanus sativus]	[more]
CAA7026995.1	3.470e-88	86.14	unnamed protein product [Microthlaspi erraticum]	[more]
XP_013619027.1	1.060e-87	85.54	PREDICTED: protein Dr1 homolog [Brassica oleracea ...	[more]
XP_010452796.1	1.560e-87	85.54	PREDICTED: protein Dr1 homolog [Camelina sativa]	[more]
XP_009122430.1	3.610e-87	100.00	protein Dr1 homolog [Brassica rapa] >XP_013715273....	[more]
XP_006399306.1	5.950e-87	85.54	protein Dr1 homolog [Eutrema salsugineum] >ESQ4075...	[more]

Pages

1
2
next ›
last »

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000976	transcription regulatory region sequence-specific DNA binding

InterPro

Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17

ZOOM

x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 14..79 e-value: 3.0E-22 score: 78.7
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 4..140 e-value: 5.4E-42 score: 144.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 12..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..166
None	No IPR available	PANTHER	PTHR47173:SF3	PROTEIN DR1 HOMOLOG	coord: 1..164
IPR044255	Protein Dr1 homolog	PANTHER	PTHR47173	PROTEIN DR1 HOMOLOG	coord: 1..164

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C09_BnaDARv10	contig	C09_BnaDARv10:62076066..62076871 - View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on Darmor-bzh OGS10 v10	2021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR	2021-04-17
Blast2GO on Darmor-bzh OGS10 v10	2021-04-17
Darmor-bzh OGS10 v10	2020-07-22

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
C09p68750.1_BnaDARv10-RA	C09p68750.1_BnaDARv10-RA	Brassica napus	mRNA	C09_BnaDARv10 62076066..62076904 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>C09p68750.1_BnaDARv10-PA ID=C09p68750.1_BnaDARv10-PA|Name=C09p68750.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=167bp
MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEF
INLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHRY
ETMQDSQRSVKMNSGAEMTEEEAAAEQQRMFAEARARMNGGGGGGVSVPQ
PDQEQQLDTQQSNPQS.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR044255	Dr1-like
IPR009072	Histone-fold
IPR003958	CBFA_NFYB_domain

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003700	DNA-binding transcription factor activity
GO:0000976	transcription regulatory region sequence-specific DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Orthology

View orthology data for C09p68750.1_BnaDARv10-PA

Metabolic Model

View data from metabolic model for C09p68750.1_BnaDARv10-PA