C09p68660.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	C09p68660.1_BnaDARv10-RA
Unique Name	C09p68660.1_BnaDARv10-PA
Type	polypeptide
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)
Sequence length	383

Homology

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BLAST of C09p68660.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013702203.1 (porphobilinogen deaminase, chloroplastic [Brassica napus] >CDY21529.1 BnaC09g47630D [Brassica napus])

HSP 1 Score: 744 bits (1920), Expect = 1.220e-270
Identity = 382/382 (100.00%), Postives = 382/382 (100.00%), Query Frame = 0

Query:    1 MEFASSSLYQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTFLPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGSCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382
            MEFASSSLYQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTFLPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGSCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN
Sbjct:    1 MEFASSSLYQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTFLPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGSCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382

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BLAST of C09p68660.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013612850.1 (PREDICTED: porphobilinogen deaminase, chloroplastic [Brassica oleracea var. oleracea])

HSP 1 Score: 737 bits (1902), Expect = 6.760e-268
Identity = 379/382 (99.21%), Postives = 380/382 (99.48%), Query Frame = 0

Query:    1 MEFASSSLYQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTFLPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGSCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382
            MEFASSSLYQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKT L CNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEG+CYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN
Sbjct:    1 MEFASSSLYQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTVLTCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGNCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382

[Close]

BLAST of C09p68660.1_BnaDARv10-RA vs. GenBank_protein
Match: RID42563.1 (hypothetical protein BRARA_J02437 [Brassica rapa])

HSP 1 Score: 734 bits (1896), Expect = 5.560e-267
Identity = 378/382 (98.95%), Postives = 380/382 (99.48%), Query Frame = 0

Query:    1 MEFASSSLYQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTFLPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGSCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382
            MEFASSSL QAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKT LPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMA+YLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEG+CYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN
Sbjct:    1 MEFASSSLCQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTVLPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMASYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGNCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382

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BLAST of C09p68660.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013715468.1 (porphobilinogen deaminase, chloroplastic [Brassica napus])

HSP 1 Score: 732 bits (1889), Expect = 6.480e-266
Identity = 376/382 (98.43%), Postives = 379/382 (99.21%), Query Frame = 0

Query:    1 MEFASSSLYQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTFLPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGSCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382
            MEFASSSL QAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKT LPCNLVREDVRDAFICLTAASLA+LPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMA+YLASLNHEETRLAVACERAFLETLDGSCRTPIAGYA KDEEG+CYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN
Sbjct:    1 MEFASSSLCQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTVLPCNLVREDVRDAFICLTAASLADLPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMASYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYATKDEEGNCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382

[Close]

BLAST of C09p68660.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009122439.1 (porphobilinogen deaminase, chloroplastic [Brassica rapa])

HSP 1 Score: 727 bits (1877), Expect = 4.370e-264
Identity = 374/382 (97.91%), Postives = 378/382 (98.95%), Query Frame = 0

Query:    1 MEFASSSLYQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTFLPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGSCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382
            M+ ASSSL QAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKC RKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKT LPCNLVREDVRDAFICLTAASLA+LPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMA+YLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEG+CYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN
Sbjct:    1 MDIASSSLCQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCGRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTVLPCNLVREDVRDAFICLTAASLADLPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMASYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGNCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382

[Close]

BLAST of C09p68660.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34289.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 726 bits (1875), Expect = 8.820e-264
Identity = 375/382 (98.17%), Postives = 377/382 (98.69%), Query Frame = 0

Query:    1 MEFASSSLYQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTFLPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGSCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382
            MEFASSSL QAHKVALTRQPSPPVNS SLGSVSVIGFSLPQISSPSLAKCRRKQSSF SVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLP+KT LPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKY SLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEG+CYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN
Sbjct:    1 MEFASSSLCQAHKVALTRQPSPPVNSSSLGSVSVIGFSLPQISSPSLAKCRRKQSSFGSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPKKTVLPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYTSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGNCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382

[Close]

BLAST of C09p68660.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD20440.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 726 bits (1875), Expect = 8.820e-264
Identity = 374/382 (97.91%), Postives = 377/382 (98.69%), Query Frame = 0

Query:    1 MEFASSSLYQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTFLPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGSCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382
            MEFASSSL QAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSS  SVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKT LPCNLVREDVRDAFICLTAASLA+LPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMA+YLASLNHEETRLAVACERAFLETLDGSCRTPIAGYA KDEEG+CYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN
Sbjct:    1 MEFASSSLCQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSPGSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTVLPCNLVREDVRDAFICLTAASLADLPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMASYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYATKDEEGNCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382

[Close]

BLAST of C09p68660.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_018445873.1 (PREDICTED: porphobilinogen deaminase, chloroplastic-like [Raphanus sativus])

HSP 1 Score: 718 bits (1854), Expect = 1.400e-260
Identity = 367/382 (96.07%), Postives = 375/382 (98.17%), Query Frame = 0

Query:    1 MEFASSSLYQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTFLPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGSCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382
            M+ ASSSLYQAHKVA  RQPSPPVNSCSLGSVSVIGFSLPQI+SPSLAKC RKQSS+  VRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQ+KHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKT LPCNLVREDVRDAFICLTAASLA+LPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKD+EG+CYFRGLVASPDGT+VLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN
Sbjct:    1 MDIASSSLYQAHKVAPMRQPSPPVNSCSLGSVSVIGFSLPQITSPSLAKCSRKQSSYGVVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQSKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTVLPCNLVREDVRDAFICLTAASLADLPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDDEGNCYFRGLVASPDGTRVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382

[Close]

BLAST of C09p68660.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3561344.1 (hypothetical protein DY000_02019481 [Brassica cretica])

HSP 1 Score: 716 bits (1849), Expect = 1.530e-259
Identity = 373/399 (93.48%), Postives = 376/399 (94.24%), Query Frame = 0

Query:    1 MEFASSSLYQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSP-----------------LALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTFLPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGSCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382
            M+ ASSSL+Q HKV LTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSS  SVRACVAVEQKTRTAIIRIGTRGSP                 LALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKT LPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEG+CYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN
Sbjct:    1 MDIASSSLFQTHKVTLTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSSGSVRACVAVEQKTRTAIIRIGTRGSPVVGFFFLGLSSYVHDSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTVLPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGNCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 399

[Close]

BLAST of C09p68660.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3499315.1 (hypothetical protein F2Q69_00045243 [Brassica cretica])

HSP 1 Score: 714 bits (1842), Expect = 1.780e-258
Identity = 373/399 (93.48%), Postives = 376/399 (94.24%), Query Frame = 0

Query:    1 MEFASSSLYQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKCRRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSP-----------------LALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTFLPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGSCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 382
            M+ ASSSL+Q HKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAK RRKQSS  SVRACVAVEQKTRTAIIRIGTRGSP                 LALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKT LPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEG+CYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN
Sbjct:    1 MDIASSSLFQTHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKYRRKQSSSGSVRACVAVEQKTRTAIIRIGTRGSPVVGFFFLGLSSYVYDSPLALAQAYETRAKLQAKHPELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTVLPCNLVREDVRDAFICLTAASLAELPAGSVVGTASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRLAVACERAFLETLDGSCRTPIAGYAAKDEEGNCYFRGLVASPDGTKVLETSRKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN 399

The following BLAST results are available for this feature:

BLAST of C09p68660.1_BnaDARv10-RA vs. GenBank_protein

BLAST of C09p68660.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
XP_013702203.1	1.220e-270	100.00	porphobilinogen deaminase, chloroplastic [Brassica...	[more]
XP_013612850.1	6.760e-268	99.21	PREDICTED: porphobilinogen deaminase, chloroplasti...	[more]
RID42563.1	5.560e-267	98.95	hypothetical protein BRARA_J02437 [Brassica rapa]	[more]
XP_013715468.1	6.480e-266	98.43	porphobilinogen deaminase, chloroplastic [Brassica...	[more]
XP_009122439.1	4.370e-264	97.91	porphobilinogen deaminase, chloroplastic [Brassica...	[more]
VDD34289.1	8.820e-264	98.17	unnamed protein product [Brassica oleracea]	[more]
VDD20440.1	8.820e-264	97.91	unnamed protein product [Brassica rapa]	[more]
XP_018445873.1	1.400e-260	96.07	PREDICTED: porphobilinogen deaminase, chloroplasti...	[more]
KAF3561344.1	1.530e-259	93.48	hypothetical protein DY000_02019481 [Brassica cret...	[more]
KAF3499315.1	1.780e-258	93.48	hypothetical protein F2Q69_00045243 [Brassica cret...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900865	chloroplast RNA modification
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0018160	peptidyl-pyrromethane cofactor linkage
biological_process	GO:0006782	protoporphyrinogen IX biosynthetic process
cellular_component	GO:0048046	apoplast
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0004418	hydroxymethylbilane synthase activity

InterPro

Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17

ZOOM

x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000860	Porphobilinogen deaminase	PRINTS	PR00151	PORPHBDMNASE	coord: 149..168 score: 60.48 coord: 197..214 score: 56.61 coord: 118..138 score: 66.21 coord: 217..234 score: 52.91 coord: 304..321 score: 53.17
IPR000860	Porphobilinogen deaminase	TIGRFAM	TIGR00212	TIGR00212	coord: 75..374 e-value: 1.7E-99 score: 330.5
IPR000860	Porphobilinogen deaminase	PANTHER	PTHR11557	PORPHOBILINOGEN DEAMINASE	coord: 21..382
IPR022418	Porphobilinogen deaminase, C-terminal	PFAM	PF03900	Porphobil_deamC	coord: 300..372 e-value: 2.9E-14 score: 53.2
IPR022417	Porphobilinogen deaminase, N-terminal	PFAM	PF01379	Porphobil_deam	coord: 75..287 e-value: 8.5E-75 score: 250.8
None	No IPR available	GENE3D	3.40.190.10		coord: 75..284 e-value: 2.7E-82 score: 277.1
None	No IPR available	GENE3D	3.40.190.10		coord: 176..276 e-value: 2.7E-82 score: 277.1
None	No IPR available	PANTHER	PTHR11557:SF8	BNAC02G01240D PROTEIN	coord: 21..382
None	No IPR available	CDD	cd13648	PBP2_PBGD_1	coord: 74..353 e-value: 0.0 score: 533.143
None	No IPR available	SUPERFAMILY	53850	Periplasmic binding protein-like II	coord: 74..292
IPR036803	Porphobilinogen deaminase, C-terminal domain superfamily	GENE3D	3.30.160.40		coord: 295..381 e-value: 6.1E-24 score: 86.2
IPR036803	Porphobilinogen deaminase, C-terminal domain superfamily	SUPERFAMILY	54782	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain	coord: 294..380
IPR022419	Porphobilinogen deaminase, dipyrromethane cofactor binding site	PROSITE	PS00533	PORPHOBILINOGEN_DEAM	coord: 305..321

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C09_BnaDARv10	contig	C09_BnaDARv10:62022407..62024349 + View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on Darmor-bzh OGS10 v10	2021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR	2021-04-17
Blast2GO on Darmor-bzh OGS10 v10	2021-04-17
Darmor-bzh OGS10 v10	2020-07-22

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
C09p68660.1_BnaDARv10-RA	C09p68660.1_BnaDARv10-RA	Brassica napus	mRNA	C09_BnaDARv10 62022407..62024427 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>C09p68660.1_BnaDARv10-PA ID=C09p68660.1_BnaDARv10-PA|Name=C09p68660.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=383bp
MEFASSSLYQAHKVALTRQPSPPVNSCSLGSVSVIGFSLPQISSPSLAKC
RRKQSSFSSVRACVAVEQKTRTAIIRIGTRGSPLALAQAYETRAKLQAKH
PELTEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDI
AVHSMKDVPTYLPEKTFLPCNLVREDVRDAFICLTAASLAELPAGSVVGT
ASLRRKSQILHKYPSLSVEENFRGNVQTRLSKLQGGKVHATLLALAGLKR
LSMTENVASILSLDEMLPAVAQGAIGIACRTDDDKMANYLASLNHEETRL
AVACERAFLETLDGSCRTPIAGYAAKDEEGSCYFRGLVASPDGTKVLETS
RKGPYVFEDMVKMGKDAGQELLSRAGPGFFGN.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022419	Porphobilin_deaminase_cofac_BS
IPR036803	Porphobilinogen_deaminase_C_sf
IPR022417	Porphobilin_deaminase_N
IPR022418	Porphobilinogen_deaminase_C
IPR000860	HemC

Vocabulary: **Biological Process**
Term	Definition
GO:0042742	defense response to bacterium
GO:1900865	chloroplast RNA modification
GO:0006782	protoporphyrinogen IX biosynthetic process
GO:0018160	peptidyl-pyrromethane cofactor linkage

Vocabulary: **Cellular Component**
Term	Definition
GO:0009941	chloroplast envelope
GO:0048046	apoplast
GO:0009570	chloroplast stroma

Vocabulary: **Molecular Function**
Term	Definition
GO:0004418	hydroxymethylbilane synthase activity

Orthology

View orthology data for C09p68660.1_BnaDARv10-PA

Metabolic Model

View data from metabolic model for C09p68660.1_BnaDARv10-PA