C09p65630.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	C09p65630.1_BnaDARv10-RA
Unique Name	C09p65630.1_BnaDARv10-PA
Type	polypeptide
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)
Sequence length	668

Homology

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BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY61661.1 (BnaCnng38220D [Brassica napus])

HSP 1 Score: 1280 bits (3312), Expect = 0.000e+0
Identity = 651/652 (99.85%), Postives = 651/652 (99.85%), Query Frame = 0

Query:    1 MDYKGPLVTSPPLTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDEGN 652
            MDYKGPLVTSPPLTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDE N
Sbjct:    1 MDYKGPLVTSPPLTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDEDN 652

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BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34063.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 1280 bits (3311), Expect = 0.000e+0
Identity = 649/652 (99.54%), Postives = 650/652 (99.69%), Query Frame = 0

Query:    1 MDYKGPLVTSPPLTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDEGN 652
            MDYKGPLVTSPPLTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLE+KKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIA GLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXX VEEHFYGEKDNDSELSSDDGKDEGN
Sbjct:    1 MDYKGPLVTSPPLTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLEKKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIACGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXDVEEHFYGEKDNDSELSSDDGKDEGN 652

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BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3503124.1 (hypothetical protein F2Q69_00045046 [Brassica cretica])

HSP 1 Score: 1244 bits (3220), Expect = 0.000e+0
Identity = 634/638 (99.37%), Postives = 635/638 (99.53%), Query Frame = 0

Query:   13 LTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDE 650
            LTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLE+KKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESED XXXX  EHFYGEKDNDSELSSDDGKDE
Sbjct:    5 LTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLEKKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDXXXXXXXEHFYGEKDNDSELSSDDGKDE 642

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BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013712031.1 (WD repeat-containing protein 43-like [Brassica napus])

HSP 1 Score: 1194 bits (3088), Expect = 0.000e+0
Identity = 610/611 (99.84%), Postives = 610/611 (99.84%), Query Frame = 0

Query:   42 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDEGN 652
            MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDE N
Sbjct:    1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDEDN 611

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BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013612355.1 (PREDICTED: WD repeat-containing protein 43 [Brassica oleracea var. oleracea])

HSP 1 Score: 1151 bits (2978), Expect = 0.000e+0
Identity = 588/612 (96.08%), Postives = 599/612 (97.88%), Query Frame = 0

Query:   42 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQG-VNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDEGN 652
            MNLVNI+DVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGN+IRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGE+YIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLY+LAISEVGVCYFWYGSNV EL +AKPTKVALATED SSLKQHKGSLPTIFAAKLQG+LKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASK+GILLPI QSASKSKKGQ  VN+VTTLDRAHAEDALLPIARVADLHEKKSVQP SSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDG+DLEAHLPPKKLKS VLSMAPSTAFKTLEALVAMWQTRGCGG+Y LPWIYSI+VNHRHYIMSQEPKNQQLLNTLHKITKCRGT LQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQ IDESED XXXXVEEHFYGEKDNDSELSSDDGKDE N
Sbjct:    1 MNLVNIRDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNLIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGEKYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYVLAISEVGVCYFWYGSNVEELSNAKPTKVALATEDYSSLKQHKGSLPTIFAAKLQGVLKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKSGILLPIAQSASKSKKGQASVNRVTTLDRAHAEDALLPIARVADLHEKKSVQPQSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGIDLEAHLPPKKLKSAVLSMAPSTAFKTLEALVAMWQTRGCGGRYLLPWIYSIMVNHRHYIMSQEPKNQQLLNTLHKITKCRGTGLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQDIDESEDXXXXXVEEHFYGEKDNDSELSSDDGKDEDN 612

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BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013668085.1 (WD repeat-containing protein 43-like isoform X2 [Brassica napus])

HSP 1 Score: 1137 bits (2941), Expect = 0.000e+0
Identity = 582/610 (95.41%), Postives = 588/610 (96.39%), Query Frame = 0

Query:   42 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGV-NKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDE 650
            MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIAS EETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAK QSASCVLALEHPPVFVDSWGETDEKGLY+LAISEVGVCYFWYGSNV EL +AKPTKVALATE SSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGV NKVTTLDRAHAEDALLPIARVADLHEKKSVQP SSDKDTDM+DQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDG+DLEAHLPPKKLKS VLSMAPSTAFKTLEALVAMWQTRGCGGKY LPWIYSI+VNHRHYIMSQEPKNQQLLNTLHKITK RG  LQ LLQLSGRL LVTAQINKAAG ETQT +HEQ  DESEDE    VEEHFYGEKDNDSELSSDDGKDE
Sbjct:    1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASAEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKMQSASCVLALEHPPVFVDSWGETDEKGLYVLAISEVGVCYFWYGSNVEELSNAKPTKVALATEGSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVQNKVTTLDRAHAEDALLPIARVADLHEKKSVQPQSSDKDTDMIDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGIDLEAHLPPKKLKSAVLSMAPSTAFKTLEALVAMWQTRGCGGKYLLPWIYSIMVNHRHYIMSQEPKNQQLLNTLHKITKSRGAALQQLLQLSGRLQLVTAQINKAAGKETQTKVHEQETDESEDEEDD-VEEHFYGEKDNDSELSSDDGKDE 609

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BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD20076.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 1136 bits (2939), Expect = 0.000e+0
Identity = 585/610 (95.90%), Postives = 592/610 (97.05%), Query Frame = 0

Query:   42 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGV-NKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDE 650
            MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIAS EETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLY+LAISEVGVCYFWYGSNV EL +AKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGV NKVTTLDRAHAEDALLPIARVADLHEKKSVQP SSDKDTDM+DQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDG+DLEAHLPPKKLKS VLSMAPSTAFKTLEALVAMWQTRGCGGKY LPWIYSI+VNHRHYIMSQEPKNQQLLNTLHKITK RG  LQ LLQLSGRL LVTAQINKAAG ETQT +HEQ  DESE  XXXXVEEHFYGEKDNDSE+SSDDGKDE
Sbjct:    1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASAEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYVLAISEVGVCYFWYGSNVEELSNAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVQNKVTTLDRAHAEDALLPIARVADLHEKKSVQPQSSDKDTDMIDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGIDLEAHLPPKKLKSAVLSMAPSTAFKTLEALVAMWQTRGCGGKYLLPWIYSIMVNHRHYIMSQEPKNQQLLNTLHKITKSRGAALQQLLQLSGRLQLVTAQINKAAGKETQTKVHEQETDESEX-XXXXVEEHFYGEKDNDSEVSSDDGKDE 609

[Close]

BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013668084.1 (WD repeat-containing protein 43-like isoform X1 [Brassica napus])

HSP 1 Score: 1131 bits (2926), Expect = 0.000e+0
Identity = 582/614 (94.79%), Postives = 588/614 (95.77%), Query Frame = 0

Query:   42 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGV-NKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQT----RGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDE 650
            MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIAS EETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAK QSASCVLALEHPPVFVDSWGETDEKGLY+LAISEVGVCYFWYGSNV EL +AKPTKVALATE SSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGV NKVTTLDRAHAEDALLPIARVADLHEKKSVQP SSDKDTDM+DQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDG+DLEAHLPPKKLKS VLSMAPSTAFKTLEALVAMWQT    RGCGGKY LPWIYSI+VNHRHYIMSQEPKNQQLLNTLHKITK RG  LQ LLQLSGRL LVTAQINKAAG ETQT +HEQ  DESEDE    VEEHFYGEKDNDSELSSDDGKDE
Sbjct:    1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASAEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKMQSASCVLALEHPPVFVDSWGETDEKGLYVLAISEVGVCYFWYGSNVEELSNAKPTKVALATEGSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVQNKVTTLDRAHAEDALLPIARVADLHEKKSVQPQSSDKDTDMIDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGIDLEAHLPPKKLKSAVLSMAPSTAFKTLEALVAMWQTSFVNRGCGGKYLLPWIYSIMVNHRHYIMSQEPKNQQLLNTLHKITKSRGAALQQLLQLSGRLQLVTAQINKAAGKETQTKVHEQETDESEDEEDD-VEEHFYGEKDNDSELSSDDGKDE 613

[Close]

BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009121974.1 (WD repeat-containing protein 43 isoform X2 [Brassica rapa] >RID42356.1 hypothetical protein BRARA_J02245 [Brassica rapa])

HSP 1 Score: 1128 bits (2918), Expect = 0.000e+0
Identity = 578/610 (94.75%), Postives = 585/610 (95.90%), Query Frame = 0

Query:   42 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGV-NKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDE 650
            MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIAS EETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETD KGLY+LAISEVGVCYFWYGSN+ EL SAKPTKVALATEDSS LK HKGSLPTIFAAKLQG+LKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQS SK KKGQGV NKVTTLDRAHA+DALLPIARVADLHEKKSV PHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDG+DLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKY LPWIYSI+VNHRHYIMSQEPKNQQLLNTLHKITK RG  LQ LLQLSGR  LVTAQINKAAG ETQT +HEQ  DESEDE    VEEHFYGEKDNDSELSSDDGKDE
Sbjct:    1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASAEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDVKGLYVLAISEVGVCYFWYGSNIEELSSAKPTKVALATEDSS-LKNHKGSLPTIFAAKLQGVLKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSVSKPKKGQGVQNKVTTLDRAHADDALLPIARVADLHEKKSVHPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGIDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYLLPWIYSIMVNHRHYIMSQEPKNQQLLNTLHKITKSRGAALQQLLQLSGRSQLVTAQINKAAGKETQTKVHEQETDESEDEEDD-VEEHFYGEKDNDSELSSDDGKDE 608

[Close]

BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009121972.1 (WD repeat-containing protein 43 isoform X1 [Brassica rapa] >RID42355.1 hypothetical protein BRARA_J02245 [Brassica rapa])

HSP 1 Score: 1122 bits (2903), Expect = 0.000e+0
Identity = 578/614 (94.14%), Postives = 585/614 (95.28%), Query Frame = 0

Query:   42 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGV-NKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQT----RGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDE 650
            MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIAS EETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETD KGLY+LAISEVGVCYFWYGSN+ EL SAKPTKVALATEDSS LK HKGSLPTIFAAKLQG+LKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQS SK KKGQGV NKVTTLDRAHA+DALLPIARVADLHEKKSV PHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDG+DLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQT    RGCGGKY LPWIYSI+VNHRHYIMSQEPKNQQLLNTLHKITK RG  LQ LLQLSGR  LVTAQINKAAG ETQT +HEQ  DESEDE    VEEHFYGEKDNDSELSSDDGKDE
Sbjct:    1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASAEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDVKGLYVLAISEVGVCYFWYGSNIEELSSAKPTKVALATEDSS-LKNHKGSLPTIFAAKLQGVLKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSVSKPKKGQGVQNKVTTLDRAHADDALLPIARVADLHEKKSVHPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGIDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTSFVNRGCGGKYLLPWIYSIMVNHRHYIMSQEPKNQQLLNTLHKITKSRGAALQQLLQLSGRSQLVTAQINKAAGKETQTKVHEQETDESEDEEDD-VEEHFYGEKDNDSELSSDDGKDE 612

The following BLAST results are available for this feature:

BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein

BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20

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x 1

POSITION

0


Match Name	E-value	Identity	Description
CDY61661.1	0.000e+0	99.85	BnaCnng38220D [Brassica napus]	[more]
VDD34063.1	0.000e+0	99.54	unnamed protein product, partial [Brassica olerace...	[more]
KAF3503124.1	0.000e+0	99.37	hypothetical protein F2Q69_00045046 [Brassica cret...	[more]
XP_013712031.1	0.000e+0	99.84	WD repeat-containing protein 43-like [Brassica nap...	[more]
XP_013612355.1	0.000e+0	96.08	PREDICTED: WD repeat-containing protein 43 [Brassi...	[more]
XP_013668085.1	0.000e+0	95.41	WD repeat-containing protein 43-like isoform X2 [B...	[more]
VDD20076.1	0.000e+0	95.90	unnamed protein product [Brassica rapa]	[more]
XP_013668084.1	0.000e+0	94.79	WD repeat-containing protein 43-like isoform X1 [B...	[more]
XP_009121974.1	0.000e+0	94.75	WD repeat-containing protein 43 isoform X2 [Brassi...	[more]
XP_009121972.1	0.000e+0	94.14	WD repeat-containing protein 43 isoform X1 [Brassi...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17

ZOOM

x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 228..268 e-value: 4.3E-4 score: 29.6 coord: 145..185 e-value: 0.42 score: 19.4 coord: 188..225 e-value: 0.038 score: 23.1 coord: 37..74 e-value: 57.0 score: 5.9
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 48..74 e-value: 0.19 score: 12.6 coord: 230..267 e-value: 7.3E-4 score: 20.3
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 235..277 score: 8.804
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 53..83 score: 8.737
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 51..347 e-value: 5.1E-31 score: 109.8
IPR007148	Small-subunit processome, Utp12	PFAM	PF04003	Utp12	coord: 504..597 e-value: 1.5E-8 score: 34.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 612..646
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 617..632
None	No IPR available	PANTHER	PTHR45290	OS03G0300300 PROTEIN	coord: 42..647
None	No IPR available	PANTHER	PTHR45290:SF1	OS03G0300300 PROTEIN	coord: 42..647
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 61..75
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 153..277 score: 11.497
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 22..325

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C09_BnaDARv10	contig	C09_BnaDARv10:60516776..60520328 - View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on Darmor-bzh OGS10 v10	2021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR	2021-04-17
Blast2GO on Darmor-bzh OGS10 v10	2021-04-17
Darmor-bzh OGS10 v10	2020-07-22

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
C09p65630.1_BnaDARv10-RA	C09p65630.1_BnaDARv10-RA	Brassica napus	mRNA	C09_BnaDARv10 60516776..60520328 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>C09p65630.1_BnaDARv10-PA ID=C09p65630.1_BnaDARv10-PA|Name=C09p65630.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=668bp
MDYKGPLVTSPPLTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDV
LTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGG
KGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKW
RISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTK
AVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTED
GKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKG
LYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPT
IFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGIL
LPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHS
SDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLD
LEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSI
IVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQI
NKAAGNETQTTLHEQVIDESEDEEEEDVEEHFYGEKDNDSELSSDDGKDE
GNYTFCFVFFLGYWFVE.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036322	WD40_repeat_dom_sf
IPR017986	WD40_repeat_dom
IPR019775	WD40_repeat_CS
IPR007148	SSU_processome_Utp12
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR001680	WD40_repeat

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005730	nucleolus

Orthology

View orthology data for C09p65630.1_BnaDARv10-PA

Metabolic Model

View data from metabolic model for C09p65630.1_BnaDARv10-PA