Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2418 |
| Exons | 6 |
| Cds size | 2187 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p11800.1_BnaDARv10 | A01p11800.1_BnaDARv10 | Brassica napus | gene | A01_BnaDARv10 5982993..5985758 + |
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340558.906533-CDS-A01_BnaDARv10:5982992..5984894 | 1626340558.906533-CDS-A01_BnaDARv10:5982992..5984894 | Brassica napus | CDS | A01_BnaDARv10 5982993..5984894 + |
| 1626340558.9137058-CDS-A01_BnaDARv10:5984964..5985072 | 1626340558.9137058-CDS-A01_BnaDARv10:5984964..5985072 | Brassica napus | CDS | A01_BnaDARv10 5984965..5985072 + |
| 1626340558.9198434-CDS-A01_BnaDARv10:5985161..5985230 | 1626340558.9198434-CDS-A01_BnaDARv10:5985161..5985230 | Brassica napus | CDS | A01_BnaDARv10 5985162..5985230 + |
| 1626340558.9259448-CDS-A01_BnaDARv10:5985301..5985337 | 1626340558.9259448-CDS-A01_BnaDARv10:5985301..5985337 | Brassica napus | CDS | A01_BnaDARv10 5985302..5985337 + |
| 1626340558.9321334-CDS-A01_BnaDARv10:5985441..5985513 | 1626340558.9321334-CDS-A01_BnaDARv10:5985441..5985513 | Brassica napus | CDS | A01_BnaDARv10 5985442..5985513 + |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p11800.1_BnaDARv10_exon1 | A01p11800.1_BnaDARv10_exon1 | Brassica napus | exon | A01_BnaDARv10 5982993..5984894 + |
| A01p11800.1_BnaDARv10_exon2 | A01p11800.1_BnaDARv10_exon2 | Brassica napus | exon | A01_BnaDARv10 5984965..5985072 + |
| A01p11800.1_BnaDARv10_exon3 | A01p11800.1_BnaDARv10_exon3 | Brassica napus | exon | A01_BnaDARv10 5985162..5985230 + |
| A01p11800.1_BnaDARv10_exon4 | A01p11800.1_BnaDARv10_exon4 | Brassica napus | exon | A01_BnaDARv10 5985302..5985337 + |
| A01p11800.1_BnaDARv10_exon5 | A01p11800.1_BnaDARv10_exon5 | Brassica napus | exon | A01_BnaDARv10 5985442..5985758 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340558.938517-three_prime_UTR-A01_BnaDARv10:5985553..5985758 | 1626340558.938517-three_prime_UTR-A01_BnaDARv10:5985553..5985758 | Brassica napus | three_prime_UTR | A01_BnaDARv10 5985554..5985758 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >A01p11800.1_BnaDARv10-RA ID=A01p11800.1_BnaDARv10-RA|Name=A01p11800.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2432bp|location=Sequence derived from alignment at A01_BnaDARv10:5982993..5985758+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGATTGATCTCGAAATGTCGTCAGGAGAATGTGATGATGATCAAAG
GATCAACGAAGGTTTAGAATTTGAATCCAAAGAGCAAGCCTTTGAGTTCT
ACAAAGGGTACGCCAAATATATCGGTTTCAACACCATTATAAAAGCTAGC
CGCCGTTCAAGAATGAGTGGGAAGTTCATCGACGCCAAGTTCGTTTGTAC
ACGCTACGGAACCAAGAAAACAAATGAAGCAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGACATAAACATCCCTCAAGCGAGAAAACGCGGGAGA
AGAACAAACCTTTCTTCCTCCAAAACAGATTGTAAAGCCTGCTTACACGT
CAAGAAAAGACAAGATGGGAGGTGGGTGATTCGCGCTTTGGTCAAAGAAC
ATAACCACGAGACCTTCCCCTCTGGTCAAACCACTTCCATAAGAGAGTCT
TGTGGACGTGGAAAGGAGATGAAAAGCAGCAGAAAGTTTCAAGCTTTGGA
GGGTGGAGACGTTGAGAGACTCCTAAGCTTCTTTACTGATATGCAAGGTG
AGAATCCTTTCTTCTTCTACGCCGTTGATCAGACTCTAAGAAGCGTCTTT
TGGGTTGACGCAAAGGGGAGATTGGACTATGCTTGTTTCTCTGATGTTGT
GTCTGTAGACACTACGTTCGTTAAGAACGAGTATAAGCTTCCTCTTGTGG
CTTTTATTGGAGTTAACCACCATGGACAGTGGTTGTTACTTGGTTGTGGA
TTGTTGTTAGACGATGAGTCTACTAAATCAGGATTCGTTTGGCTTTTTAA
GTCATGGTTAAAGGCGATGCACGGATGTCAACCTAGAGTTATACTCACCA
AACACGACCAGACCCTCAAAGAAGCTGTCTCTGAAGCTTTGCCATCGTCT
AGACATTGTTTTAACATGTATGATACTCTTGGTCAGATGTCTGAGAAGGT
TGGTCAAGGCTTTGTGGATGAGATAAACGAAGTTATTTACGGTTCTTGCG
AGGGAGATGAGTTTGAAGAGAGATGGTGTGAGGTGGTTGATAGGTTTGAT
GTGAGAGACAATGATTGGCTTCGTTCTCTGTATGAAGATAGAGAACATTG
GGTTCCTGTGTATATGCAAGACGTTTCTCTAGCGGGGATGTGTAGTACAG
ATTCTGTTTTGGATAAGTACATTCAAAGGAAGACCACTTTGAGAGCGTTT
CTTGATCAGTACAAGAGGATGATGCAAGAGAGGGTTGAAGAGGAAGAGAA
GGCTGAGATTGATACGTTGTGTAAACAGCCTGGTTTGAAGTCTCCTTCAC
CGTTTGGGAAGCAGATGGCTGAGCTGTACACTCGTGAGATGTTCAAGAGG
TTTCAGGTTGAGGTGTTGGGAGGTGTAGCTTGTCATCCGAAGATAGAAAG
CGACGAGGGTAACAACAAGAAGATGACTTTCAGGGTTCAAGACTATGAGC
AGAACCGTGCGTTCGTTGTGGTGTGGAGCTCTGAATCATCTGAAGTTGTT
TGTTCGTGTAGGTTGTTTGAGTTCAAAGGGTTTCTTTGTAGACACGCGAT
GATTGTTCTGCAGATGTCTGGAGAACTTAGTGTTCCTTCTCGGTATGTGT
TGAAGCGTTGGAGAAAAGATGCGAGAAGGAGAGAAGCTGTTGAGTCTGAT
CTGATGTCTAGAGATTTAACTAAGGCTCAGCGGTATACGGATCTTTGTCT
CCGGTCTTTGAAGTTGAGTGAGGAAGCATCTTTATCTGAAGAGAGTTATA
ACGCTGTGATGAATGTGCTGAATGAAGCTTTTAGAAAGTGTGAGATCACA
AGTAATGTGATACACATTGTTGAAGAGTCAGACTCTGATGTAGCTCATGA
AGAACATAACAACAACAACTCATTTAATGAGAATGTGGCTGACACAGGAC
AGGAACATTCATTACATGAAGCCTGGAAAGAAACTGCTTTGCAAGAACAA
AGAAACCGTTACTCGATTCTTGACGACTACCTCAGCGCTCAACAAATGTC
ACATGAAATGGGACAAATCAGCATGATGGCCTCAAACCGAAATGGATATT
CTACTTCCCATCAAAACATACACTCACTGGGACAATCCATAACACAGCAA
AGGCTTTATGAAACTGATCAATTAAGTTTCAGACCAGATCAAGTTATGTA
TGAAAGACTTCAGGACATGGTAAAAGACTTGAACTAGACCTTTTGAAGCT
ATCTCGGATTTTCTTGCGCTTCTCTTTTTTTTTTTTTTCACAAAAGAGTT
TTTGTTTATTCATGAATGTTAGGGACAGACAAGTTTTAGACATCATCCTC
AGCAACATTGCGAGTCTTCAAAACATCAACAATCCAACAAGAATGTATCT
CTCTGAGTTACTTGTCCGTTTAAGCAGGAGAGTTTAACATTTTAATATAT
TTGATTTAAGTTTTGATGGAAAAAAAATTGAA back to topprotein sequence of A01p11800.1_BnaDARv10-RA >A01p11800.1_BnaDARv10-PA ID=A01p11800.1_BnaDARv10-PA|Name=A01p11800.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=729bp
MEIDLEMSSGECDDDQRINEGLEFESKEQAFEFYKGYAKYIGFNTIIKAS
RRSRMSGKFIDAKFVCTRYGTKKTNEAEEEEEEEEEEEDINIPQARKRGR
RTNLSSSKTDCKACLHVKKRQDGRWVIRALVKEHNHETFPSGQTTSIRES
CGRGKEMKSSRKFQALEGGDVERLLSFFTDMQGENPFFFYAVDQTLRSVF
WVDAKGRLDYACFSDVVSVDTTFVKNEYKLPLVAFIGVNHHGQWLLLGCG
LLLDDESTKSGFVWLFKSWLKAMHGCQPRVILTKHDQTLKEAVSEALPSS
RHCFNMYDTLGQMSEKVGQGFVDEINEVIYGSCEGDEFEERWCEVVDRFD
VRDNDWLRSLYEDREHWVPVYMQDVSLAGMCSTDSVLDKYIQRKTTLRAF
LDQYKRMMQERVEEEEKAEIDTLCKQPGLKSPSPFGKQMAELYTREMFKR
FQVEVLGGVACHPKIESDEGNNKKMTFRVQDYEQNRAFVVVWSSESSEVV
CSCRLFEFKGFLCRHAMIVLQMSGELSVPSRYVLKRWRKDARRREAVESD
LMSRDLTKAQRYTDLCLRSLKLSEEASLSEESYNAVMNVLNEAFRKCEIT
SNVIHIVEESDSDVAHEEHNNNNSFNENVADTGQEHSLHEAWKETALQEQ
RNRYSILDDYLSAQQMSHEMGQISMMASNRNGYSTSHQNIHSLGQSITQQ
RLYETDQLSFRPDQVMYERLQDMVKDLN. back to topmRNA from alignment at A01_BnaDARv10:5982993..5985758+ Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >A01p11800.1_BnaDARv10-RA ID=A01p11800.1_BnaDARv10-RA|Name=A01p11800.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2766bp|location=Sequence derived from alignment at A01_BnaDARv10:5982993..5985758+ (Brassica napus)
ATGGAGATTGATCTCGAAATGTCGTCAGGAGAATGTGATGATGATCAAAG
GATCAACGAAGGTTTAGAATTTGAATCCAAAGAGCAAGCCTTTGAGTTCT
ACAAAGGGTACGCCAAATATATCGGTTTCAACACCATTATAAAAGCTAGC
CGCCGTTCAAGAATGAGTGGGAAGTTCATCGACGCCAAGTTCGTTTGTAC
ACGCTACGGAACCAAGAAAACAAATGAAGCAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGACATAAACATCCCTCAAGCGAGAAAACGCGGGAGA
AGAACAAACCTTTCTTCCTCCAAAACAGATTGTAAAGCCTGCTTACACGT
CAAGAAAAGACAAGATGGGAGGTGGGTGATTCGCGCTTTGGTCAAAGAAC
ATAACCACGAGACCTTCCCCTCTGGTCAAACCACTTCCATAAGAGAGTCT
TGTGGACGTGGAAAGGAGATGAAAAGCAGCAGAAAGTTTCAAGCTTTGGA
GGGTGGAGACGTTGAGAGACTCCTAAGCTTCTTTACTGATATGCAAGGTG
AGAATCCTTTCTTCTTCTACGCCGTTGATCAGACTCTAAGAAGCGTCTTT
TGGGTTGACGCAAAGGGGAGATTGGACTATGCTTGTTTCTCTGATGTTGT
GTCTGTAGACACTACGTTCGTTAAGAACGAGTATAAGCTTCCTCTTGTGG
CTTTTATTGGAGTTAACCACCATGGACAGTGGTTGTTACTTGGTTGTGGA
TTGTTGTTAGACGATGAGTCTACTAAATCAGGATTCGTTTGGCTTTTTAA
GTCATGGTTAAAGGCGATGCACGGATGTCAACCTAGAGTTATACTCACCA
AACACGACCAGACCCTCAAAGAAGCTGTCTCTGAAGCTTTGCCATCGTCT
AGACATTGTTTTAACATGTATGATACTCTTGGTCAGATGTCTGAGAAGGT
TGGTCAAGGCTTTGTGGATGAGATAAACGAAGTTATTTACGGTTCTTGCG
AGGGAGATGAGTTTGAAGAGAGATGGTGTGAGGTGGTTGATAGGTTTGAT
GTGAGAGACAATGATTGGCTTCGTTCTCTGTATGAAGATAGAGAACATTG
GGTTCCTGTGTATATGCAAGACGTTTCTCTAGCGGGGATGTGTAGTACAG
ATTCTGTTTTGGATAAGTACATTCAAAGGAAGACCACTTTGAGAGCGTTT
CTTGATCAGTACAAGAGGATGATGCAAGAGAGGGTTGAAGAGGAAGAGAA
GGCTGAGATTGATACGTTGTGTAAACAGCCTGGTTTGAAGTCTCCTTCAC
CGTTTGGGAAGCAGATGGCTGAGCTGTACACTCGTGAGATGTTCAAGAGG
TTTCAGGTTGAGGTGTTGGGAGGTGTAGCTTGTCATCCGAAGATAGAAAG
CGACGAGGGTAACAACAAGAAGATGACTTTCAGGGTTCAAGACTATGAGC
AGAACCGTGCGTTCGTTGTGGTGTGGAGCTCTGAATCATCTGAAGTTGTT
TGTTCGTGTAGGTTGTTTGAGTTCAAAGGGTTTCTTTGTAGACACGCGAT
GATTGTTCTGCAGATGTCTGGAGAACTTAGTGTTCCTTCTCGGTATGTGT
TGAAGCGTTGGAGAAAAGATGCGAGAAGGAGAGAAGCTGTTGAGTCTGAT
CTGATGTCTAGAGATTTAACTAAGGCTCAGCGGTATACGGATCTTTGTCT
CCGGTCTTTGAAGTTGAGTGAGGAAGCATCTTTATCTGAAGAGAGTTATA
ACGCTGTGATGAATGTGCTGAATGAAGCTTTTAGAAAGTGTGAGATCACA
AGTAATGTGATACACATTGTTGAAGAGTCAGACTCTGATGTAGCTCATGA
AGAACATAACAACAACAACTCATTTAATGAGAATGTGGCTGACACAGGAC
AGGTTAATCTCATGATCATTGTCTTCATAAGACCAAGTTTTTGGGCTAAC
GTGGCTTTCTCTTTGTCTAAAGGAACATTCATTACATGAAGCCTGGAAAG
AAACTGCTTTGCAAGAACAAAGAAACCGTTACTCGATTCTTGACGACTAC
CTCAGCGCTCAACAAATGTCACATGAAATGGTACACTAGAAAAGTCCTTT
ACAGCTATATAATATAAGAAAAGGTCAAACTTCAATCTAACATTGTTAGC
TCTTCTCTGTGACCAACAGGGACAAATCAGCATGATGGCCTCAAACCGAA
ATGGATATTCTACTTCCCATCAAAACATACACTCACTGGTATGTATGTAA
CTGCTTATGTTCTATGGTGTTTAAACTGCTGAAGATCCTTTTATTATATC
TCATTGCAGGGACAATCCATAACACAGCAAAGGCTTTATGAAACTGTAAG
TTGTTCACTGAATCAAGTCTGCATAACCTCAAATATTTATTTCATAGATG
AGTTTTTGAGCTGGTTTTAATTAAAATTCAATGTTGAAAATTATGGCAGG
ATCAATTAAGTTTCAGACCAGATCAAGTTATGTATGAAAGACTTCAGGAC
ATGGTAAAAGACTTGAACTAGACCTTTTGAAGCTATCTCGGATTTTCTTG
CGCTTCTCTTTTTTTTTTTTTTCACAAAAGAGTTTTTGTTTATTCATGAA
TGTTAGGGACAGACAAGTTTTAGACATCATCCTCAGCAACATTGCGAGTC
TTCAAAACATCAACAATCCAACAAGAATGTATCTCTCTGAGTTACTTGTC
CGTTTAAGCAGGAGAGTTTAACATTTTAATATATTTGATTTAAGTTTTGA
TGGAAAAAAAATTGAA back to topCoding sequence (CDS) from alignment at A01_BnaDARv10:5982993..5985758+ >A01p11800.1_BnaDARv10-RA ID=A01p11800.1_BnaDARv10-RA|Name=A01p11800.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=2187bp|location=Sequence derived from alignment at A01_BnaDARv10:5982993..5985758+ (Brassica napus)
ATGGAGATTGATCTCGAAATGTCGTCAGGAGAATGTGATGATGATCAAAG
GATCAACGAAGGTTTAGAATTTGAATCCAAAGAGCAAGCCTTTGAGTTCT
ACAAAGGGTACGCCAAATATATCGGTTTCAACACCATTATAAAAGCTAGC
CGCCGTTCAAGAATGAGTGGGAAGTTCATCGACGCCAAGTTCGTTTGTAC
ACGCTACGGAACCAAGAAAACAAATGAAGCAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGACATAAACATCCCTCAAGCGAGAAAACGCGGGAGA
AGAACAAACCTTTCTTCCTCCAAAACAGATTGTAAAGCCTGCTTACACGT
CAAGAAAAGACAAGATGGGAGGTGGGTGATTCGCGCTTTGGTCAAAGAAC
ATAACCACGAGACCTTCCCCTCTGGTCAAACCACTTCCATAAGAGAGTCT
TGTGGACGTGGAAAGGAGATGAAAAGCAGCAGAAAGTTTCAAGCTTTGGA
GGGTGGAGACGTTGAGAGACTCCTAAGCTTCTTTACTGATATGCAAGGTG
AGAATCCTTTCTTCTTCTACGCCGTTGATCAGACTCTAAGAAGCGTCTTT
TGGGTTGACGCAAAGGGGAGATTGGACTATGCTTGTTTCTCTGATGTTGT
GTCTGTAGACACTACGTTCGTTAAGAACGAGTATAAGCTTCCTCTTGTGG
CTTTTATTGGAGTTAACCACCATGGACAGTGGTTGTTACTTGGTTGTGGA
TTGTTGTTAGACGATGAGTCTACTAAATCAGGATTCGTTTGGCTTTTTAA
GTCATGGTTAAAGGCGATGCACGGATGTCAACCTAGAGTTATACTCACCA
AACACGACCAGACCCTCAAAGAAGCTGTCTCTGAAGCTTTGCCATCGTCT
AGACATTGTTTTAACATGTATGATACTCTTGGTCAGATGTCTGAGAAGGT
TGGTCAAGGCTTTGTGGATGAGATAAACGAAGTTATTTACGGTTCTTGCG
AGGGAGATGAGTTTGAAGAGAGATGGTGTGAGGTGGTTGATAGGTTTGAT
GTGAGAGACAATGATTGGCTTCGTTCTCTGTATGAAGATAGAGAACATTG
GGTTCCTGTGTATATGCAAGACGTTTCTCTAGCGGGGATGTGTAGTACAG
ATTCTGTTTTGGATAAGTACATTCAAAGGAAGACCACTTTGAGAGCGTTT
CTTGATCAGTACAAGAGGATGATGCAAGAGAGGGTTGAAGAGGAAGAGAA
GGCTGAGATTGATACGTTGTGTAAACAGCCTGGTTTGAAGTCTCCTTCAC
CGTTTGGGAAGCAGATGGCTGAGCTGTACACTCGTGAGATGTTCAAGAGG
TTTCAGGTTGAGGTGTTGGGAGGTGTAGCTTGTCATCCGAAGATAGAAAG
CGACGAGGGTAACAACAAGAAGATGACTTTCAGGGTTCAAGACTATGAGC
AGAACCGTGCGTTCGTTGTGGTGTGGAGCTCTGAATCATCTGAAGTTGTT
TGTTCGTGTAGGTTGTTTGAGTTCAAAGGGTTTCTTTGTAGACACGCGAT
GATTGTTCTGCAGATGTCTGGAGAACTTAGTGTTCCTTCTCGGTATGTGT
TGAAGCGTTGGAGAAAAGATGCGAGAAGGAGAGAAGCTGTTGAGTCTGAT
CTGATGTCTAGAGATTTAACTAAGGCTCAGCGGTATACGGATCTTTGTCT
CCGGTCTTTGAAGTTGAGTGAGGAAGCATCTTTATCTGAAGAGAGTTATA
ACGCTGTGATGAATGTGCTGAATGAAGCTTTTAGAAAGTGTGAGATCACA
AGTAATGTGATACACATTGTTGAAGAGTCAGACTCTGATGTAGCTCATGA
AGAACATAACAACAACAACTCATTTAATGAGAATGTGGCTGACACAGGAC
AGGAACATTCATTACATGAAGCCTGGAAAGAAACTGCTTTGCAAGAACAA
AGAAACCGTTACTCGATTCTTGACGACTACCTCAGCGCTCAACAAATGTC
ACATGAAATGGGACAAATCAGCATGATGGCCTCAAACCGAAATGGATATT
CTACTTCCCATCAAAACATACACTCACTGGGACAATCCATAACACAGCAA
AGGCTTTATGAAACTGATCAATTAAGTTTCAGACCAGATCAAGTTATGTA
TGAAAGACTTCAGGACATGGTAAAAGACTTGAACTAG back to top
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