Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1076 |
| Exons | 5 |
| Cds size | 771 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p11340.1_BnaDARv10 | A01p11340.1_BnaDARv10 | Brassica napus | gene | A01_BnaDARv10 5718957..5720672 - |
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340553.7782142-five_prime_UTR-A01_BnaDARv10:5718956..5719098 | 1626340553.7782142-five_prime_UTR-A01_BnaDARv10:5718956..5719098 | Brassica napus | five_prime_UTR | A01_BnaDARv10 5718957..5719098 - |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p11340.1_BnaDARv10_exon1 | A01p11340.1_BnaDARv10_exon1 | Brassica napus | exon | A01_BnaDARv10 5718957..5719308 - |
| A01p11340.1_BnaDARv10_exon2 | A01p11340.1_BnaDARv10_exon2 | Brassica napus | exon | A01_BnaDARv10 5719394..5719536 - |
| A01p11340.1_BnaDARv10_exon3 | A01p11340.1_BnaDARv10_exon3 | Brassica napus | exon | A01_BnaDARv10 5719640..5719721 - |
| A01p11340.1_BnaDARv10_exon4 | A01p11340.1_BnaDARv10_exon4 | Brassica napus | exon | A01_BnaDARv10 5719888..5719965 - |
| A01p11340.1_BnaDARv10_exon5 | A01p11340.1_BnaDARv10_exon5 | Brassica napus | exon | A01_BnaDARv10 5720252..5720672 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340553.7852745-CDS-A01_BnaDARv10:5719098..5719308 | 1626340553.7852745-CDS-A01_BnaDARv10:5719098..5719308 | Brassica napus | CDS | A01_BnaDARv10 5719099..5719308 - |
| 1626340553.7914035-CDS-A01_BnaDARv10:5719393..5719536 | 1626340553.7914035-CDS-A01_BnaDARv10:5719393..5719536 | Brassica napus | CDS | A01_BnaDARv10 5719394..5719536 - |
| 1626340553.7979531-CDS-A01_BnaDARv10:5719639..5719721 | 1626340553.7979531-CDS-A01_BnaDARv10:5719639..5719721 | Brassica napus | CDS | A01_BnaDARv10 5719640..5719721 - |
| 1626340553.8041022-CDS-A01_BnaDARv10:5719887..5719965 | 1626340553.8041022-CDS-A01_BnaDARv10:5719887..5719965 | Brassica napus | CDS | A01_BnaDARv10 5719888..5719965 - |
| 1626340553.810317-CDS-A01_BnaDARv10:5720251..5720509 | 1626340553.810317-CDS-A01_BnaDARv10:5720251..5720509 | Brassica napus | CDS | A01_BnaDARv10 5720252..5720509 - |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340553.8164184-three_prime_UTR-A01_BnaDARv10:5720509..5720672 | 1626340553.8164184-three_prime_UTR-A01_BnaDARv10:5720509..5720672 | Brassica napus | three_prime_UTR | A01_BnaDARv10 5720510..5720672 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >A01p11340.1_BnaDARv10-RA ID=A01p11340.1_BnaDARv10-RA|Name=A01p11340.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1076bp|location=Sequence derived from alignment at A01_BnaDARv10:5718957..5720672- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.
ACTTCGTCCAAGTGGAATCGTAAGACACCGTACAACTAATCTCCTGTCTC
CTTAACACGTCTCTCAATCTCTAACTATCTTCTTCTTCTACTCTCTCCCC
CTCCCCCAAGCTCCACACCTTGTTTGACTCAACAACGACTCGTCTAACCC
TTTAGCAGCAGCCATGACAACTCCTCCTTGCCGGACCATAAACGCTAATA
ATGCTATCGCCGCGCCATCGCCTTCGGGAATGATCTTCCACGGTAAGAGG
CTCGTGAAATCAAGCTCACCTGGCTTGAATCTCCCGACGAAGAGATTGGC
TTGGAGCTTAAGTTCTCCGGGGAGGTTTCTCTCTTCTCCAGTGGCCTCTA
GTTCTACATCGGCGGCTGTGACATCGAATTCTACGAATCGACTGGAAGCT
TTAGAAGAAGGGATTGAGAAGGTCATTTATCAATGTAGATTCATGGCGTT
TCTTGGAACTTTAGGATCTCTTTTGGGATCGGTTCTGTGTTTCATCAAGG
GATGTCAGTACGTCGGAGACTCGTTTGTGCAGTACTCTGTGAACCGTGGG
AAGGTGATATTACTTCTGGTAGAAGCCATAGATACATACCTTCTAGGAAC
TGTGATGTTGGTCTTCGGGATGGGCCTTTACGAGCTCTTCATTAGCAACC
TCACAACTTCGGAAACCATTTCACACGACAGTGTTTCCAATAGATCGAGT
CTCTTTGGCATGTTCCCCTTAAAGGAGCGACCTCAATGGTTAGAGGTGAA
AACAGTTAGTGAGCTGAAAACGAAGCTGGGACATGTTATAGTGATGCTAC
TGTTGATTGGTTTGTTCGACAAGAGCAGGAAAGTTGCCATCACTTCTGTC
GCGGATTTGCTATGTATCTCTGCTTCTATCTTTCTTTCTTCGGCTTGTCT
CTTCTTGCTCTCTAGGCTCAATGGCTCACACTGAGTTAATCCTGTTGCCT
TTTTTAAACAAATGACACTTTGTATTATGTGTATAATGTTTTAGTAAAGT
TTCACATTCTCTTTTGCCTATATTGTACTTTTTGAAAAAGTAATCAAAAT
ATACAGCAATCCGAATCTAGAGTTTG back to topprotein sequence of A01p11340.1_BnaDARv10-RA >A01p11340.1_BnaDARv10-PA ID=A01p11340.1_BnaDARv10-PA|Name=A01p11340.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=257bp
MTTPPCRTINANNAIAAPSPSGMIFHGKRLVKSSSPGLNLPTKRLAWSLS
SPGRFLSSPVASSSTSAAVTSNSTNRLEALEEGIEKVIYQCRFMAFLGTL
GSLLGSVLCFIKGCQYVGDSFVQYSVNRGKVILLLVEAIDTYLLGTVMLV
FGMGLYELFISNLTTSETISHDSVSNRSSLFGMFPLKERPQWLEVKTVSE
LKTKLGHVIVMLLLIGLFDKSRKVAITSVADLLCISASIFLSSACLFLLS
RLNGSH. back to topmRNA from alignment at A01_BnaDARv10:5718957..5720672- Legend: exonthree_prime_UTRpolypeptideCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >A01p11340.1_BnaDARv10-RA ID=A01p11340.1_BnaDARv10-RA|Name=A01p11340.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1716bp|location=Sequence derived from alignment at A01_BnaDARv10:5718957..5720672- (Brassica napus)
ACTTCGTCCAAGTGGAATCGTAAGACACCGTACAACTAATCTCCTGTCTC
CTTAACACGTCTCTCAATCTCTAACTATCTTCTTCTTCTACTCTCTCCCC
CTCCCCCAAGCTCCACACCTTGTTTGACTCAACAACGACTCGTCTAACCC
TTTAGCAGCAGCCATGACAACTCCTCCTTGCCGGACCATAAACGCTAATA
ATGCTATCGCCGCGCCATCGCCTTCGGGAATGATCTTCCACGGTAAGAGG
CTCGTGAAATCAAGCTCACCTGGCTTGAATCTCCCGACGAAGAGATTGGC
TTGGAGCTTAAGTTCTCCGGGGAGGTTTCTCTCTTCTCCAGTGGCCTCTA
GTTCTACATCGGCGGCTGTGACATCGAATTCTACGAATCGACTGGAAGCT
TTAGAAGAAGGGATTGAGAAGGTAAAAAAAAAGGGTCGATTCCAGATTCC
ATTTAGTTAGTGAATTAATCGATAAAATTGTTAACTTTAAGGATTTGAAT
TTGGTTGTTTATAGTTTGAAGCAGAGGTTATAATGTGTTCTTAGTTAAAA
GATAGAGATTTTTTTTTTTTAAAGGAAACCAAAGGTAAAAGGGATGATTA
CTAAAGATCATAACATTGATTGATGTTTGGTAAAGGCTGTCTTTTTTTTT
TATCAGTTATAAGGGATATGAATGGCTCAACGAATAAGAGAACATGTGTT
TTTTCAGGTCATTTATCAATGTAGATTCATGGCGTTTCTTGGAACTTTAG
GATCTCTTTTGGGATCGGTTCTGTGTTTCATCAAGGTAAAAGCCACTGCA
GATTCTCTTCTTGCTCTCTCTCTCTCTGGTTTAGATGATATAGTGTTGGA
ATATGCATAAGAATGTCCTAATTTTTTTTAATCTTACAGAAGCAACACAT
TATATACTCTATAAACTATTTTGCTGTTCCTCTAACATTTGATTGGTACA
GGGATGTCAGTACGTCGGAGACTCGTTTGTGCAGTACTCTGTGAACCGTG
GGAAGGTGATATTACTTCTGGTAGAAGCCATAGGTGAGAAAGTTTGTTGT
TATTACTTCTTTTGTAAGAGCATATTATTATATGCACAGAAACTTTATTG
ATAAATCATATATGATGCTACACAACATATTTGTAGATACATACCTTCTA
GGAACTGTGATGTTGGTCTTCGGGATGGGCCTTTACGAGCTCTTCATTAG
CAACCTCACAACTTCGGAAACCATTTCACACGACAGTGTTTCCAATAGAT
CGAGTCTCTTTGGCATGTTCCCCTTAAAGGTTGCTCTTTTTTTTTTAAGA
ATCTTTATAATGGATCAAAAATTTCCTTTTTGGTTATGCTAAATCCTTTT
TTTGTTTTCTTCAGGAGCGACCTCAATGGTTAGAGGTGAAAACAGTTAGT
GAGCTGAAAACGAAGCTGGGACATGTTATAGTGATGCTACTGTTGATTGG
TTTGTTCGACAAGAGCAGGAAAGTTGCCATCACTTCTGTCGCGGATTTGC
TATGTATCTCTGCTTCTATCTTTCTTTCTTCGGCTTGTCTCTTCTTGCTC
TCTAGGCTCAATGGCTCACACTGAGTTAATCCTGTTGCCTTTTTTAAACA
AATGACACTTTGTATTATGTGTATAATGTTTTAGTAAAGTTTCACATTCT
CTTTTGCCTATATTGTACTTTTTGAAAAAGTAATCAAAATATACAGCAAT
CCGAATCTAGAGTTTG back to topCoding sequence (CDS) from alignment at A01_BnaDARv10:5718957..5720672- >A01p11340.1_BnaDARv10-RA ID=A01p11340.1_BnaDARv10-RA|Name=A01p11340.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=771bp|location=Sequence derived from alignment at A01_BnaDARv10:5718957..5720672- (Brassica napus)
ATGACAACTCCTCCTTGCCGGACCATAAACGCTAATAATGCTATCGCCGC
GCCATCGCCTTCGGGAATGATCTTCCACGGTAAGAGGCTCGTGAAATCAA
GCTCACCTGGCTTGAATCTCCCGACGAAGAGATTGGCTTGGAGCTTAAGT
TCTCCGGGGAGGTTTCTCTCTTCTCCAGTGGCCTCTAGTTCTACATCGGC
GGCTGTGACATCGAATTCTACGAATCGACTGGAAGCTTTAGAAGAAGGGA
TTGAGAAGGTCATTTATCAATGTAGATTCATGGCGTTTCTTGGAACTTTA
GGATCTCTTTTGGGATCGGTTCTGTGTTTCATCAAGGGATGTCAGTACGT
CGGAGACTCGTTTGTGCAGTACTCTGTGAACCGTGGGAAGGTGATATTAC
TTCTGGTAGAAGCCATAGATACATACCTTCTAGGAACTGTGATGTTGGTC
TTCGGGATGGGCCTTTACGAGCTCTTCATTAGCAACCTCACAACTTCGGA
AACCATTTCACACGACAGTGTTTCCAATAGATCGAGTCTCTTTGGCATGT
TCCCCTTAAAGGAGCGACCTCAATGGTTAGAGGTGAAAACAGTTAGTGAG
CTGAAAACGAAGCTGGGACATGTTATAGTGATGCTACTGTTGATTGGTTT
GTTCGACAAGAGCAGGAAAGTTGCCATCACTTCTGTCGCGGATTTGCTAT
GTATCTCTGCTTCTATCTTTCTTTCTTCGGCTTGTCTCTTCTTGCTCTCT
AGGCTCAATGGCTCACACTGA back to top
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