Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1376 |
| Exons | 1 |
| Cds size | 1137 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p11070.1_BnaDARv10 | A01p11070.1_BnaDARv10 | Brassica napus | gene | A01_BnaDARv10 5557676..5559051 - |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340551.0598037-five_prime_UTR-A01_BnaDARv10:5557675..5557914 | 1626340551.0598037-five_prime_UTR-A01_BnaDARv10:5557675..5557914 | Brassica napus | five_prime_UTR | A01_BnaDARv10 5557676..5557914 - |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p11070.1_BnaDARv10_exon1 | A01p11070.1_BnaDARv10_exon1 | Brassica napus | exon | A01_BnaDARv10 5557676..5559051 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340551.071485-CDS-A01_BnaDARv10:5557914..5559051 | 1626340551.071485-CDS-A01_BnaDARv10:5557914..5559051 | Brassica napus | CDS | A01_BnaDARv10 5557915..5559051 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >A01p11070.1_BnaDARv10-RA ID=A01p11070.1_BnaDARv10-RA|Name=A01p11070.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1376bp|location=Sequence derived from alignment at A01_BnaDARv10:5557676..5559051- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.
ATGGAACAAGAAATAAAAAGACACAGAGATCTGGTTATGGCTCTAGCTAA
TAAGAAGCGTTTGTCTGAAATTGATAAGAAGCTCGCTATGATTGAGTCTA
CTTTTAAAATAAACTATGGCTATTGGCTTAAAGGAATGATCGATGATTCA
TCATCATCAGCAACTCCTGACAGTAAAGTAACGCGATCTAAGACGAGCCG
AGTGGAGACGAGACCTGACCTTCCGGAACAACCTATTCGTGGTTTTGTAA
ACGAGTCCTTGTTCTTGAAGAACTTCTTGCTGAAGGGAAAGGGATCCGAA
GAGTTCAAGACGCTAGCCATCGTGGGGAAGTTCGGAGTCGGGAAAACGAC
CTTGTGTCAGGATGTGTTCAACGACAAAGACGTGAAACAAGCTTATCTCC
CGAGGGTATGGGTGTCTATGTACAGCGGAGAAACTAAAGAAGATGAAGGA
GATCAAAAGGGAGCTGTGCTGAAGAGGATCTTGAGATCGCTTGGAGTTGA
AGATGAGGCGCTTGACAGCATCAGAACAGAAGCAGACGAAGAGAAGAGGA
AAAACGCTGAAGAAGGGAGAAGAGATGAAGAGACGGTTAAAGAGAAGGAG
CTCTTTAGGTTACTGAATGCTCTTAACTCGAATCTGTTTGGTAAGAGATA
TCTGATCGTGTTGGACGATGTCTGGGAGGATAACGAGTGGAGTCAGAGGC
TGGATGGTGAGGAGACACAACAGGAGAAAACGCATCTTTCTTGTGGGTTT
CCTAAAGGGTCTGGTGGGAGAGTGATTGTGACAAGCAGAGACGAGGGCCT
GGCCAAGAAGATAGTCGGAGAAGAAGAGAAAGTGCAGCGTCTGTTCCCGA
GATCAGACGTAGAGAGCGTGTGGGAGATCTACAAAGATGCATTTGGAGAG
CCCATGAAAGATGAAAATGGAGAAGTCGTGAAAGATGCAGCTGGAGAACC
GATGAAGGATGCCGTTGAAAAGCACGTGATAGGTGATGATGGTAGGCCAA
CAAAATGGGTAGTGAACCCGAGGTACCCAGGGAGATACAAAAAGGAGCTT
ATGGATAAGTCTGGTGGTGTTCCTTGGGCTGCTCAAATGCTGGCGAAGAT
TGAGCCTCTCAAAAATGATGAAGACAAGGACATGTAGACAAACTTGTAAA
GCAAGGATGTAATCTACTACGTATTTACTCTCTAACCTAAGGACACATTT
CAAGATTACTACTGTATTTCAAGTTTATTTTATTTTCCTACAAACTGTTA
AGTGTACTTGTAACTCGTAGAAGTGTAAACCTCTGCTGGTATTTGACAAT
AAACAATGTAATAAAGAGTTACAACACAGATGTCTGACAGTTATAAGATA
ATGTATAACGCGTCTCTAAGGCCATG back to topprotein sequence of A01p11070.1_BnaDARv10-RA >A01p11070.1_BnaDARv10-PA ID=A01p11070.1_BnaDARv10-PA|Name=A01p11070.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=379bp
MEQEIKRHRDLVMALANKKRLSEIDKKLAMIESTFKINYGYWLKGMIDDS
SSSATPDSKVTRSKTSRVETRPDLPEQPIRGFVNESLFLKNFLLKGKGSE
EFKTLAIVGKFGVGKTTLCQDVFNDKDVKQAYLPRVWVSMYSGETKEDEG
DQKGAVLKRILRSLGVEDEALDSIRTEADEEKRKNAEEGRRDEETVKEKE
LFRLLNALNSNLFGKRYLIVLDDVWEDNEWSQRLDGEETQQEKTHLSCGF
PKGSGGRVIVTSRDEGLAKKIVGEEEKVQRLFPRSDVESVWEIYKDAFGE
PMKDENGEVVKDAAGEPMKDAVEKHVIGDDGRPTKWVVNPRYPGRYKKEL
MDKSGGVPWAAQMLAKIEPLKNDEDKDM. back to topmRNA from alignment at A01_BnaDARv10:5557676..5559051- Legend: exonpolypeptideCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >A01p11070.1_BnaDARv10-RA ID=A01p11070.1_BnaDARv10-RA|Name=A01p11070.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1376bp|location=Sequence derived from alignment at A01_BnaDARv10:5557676..5559051- (Brassica napus)
ATGGAACAAGAAATAAAAAGACACAGAGATCTGGTTATGGCTCTAGCTAA
TAAGAAGCGTTTGTCTGAAATTGATAAGAAGCTCGCTATGATTGAGTCTA
CTTTTAAAATAAACTATGGCTATTGGCTTAAAGGAATGATCGATGATTCA
TCATCATCAGCAACTCCTGACAGTAAAGTAACGCGATCTAAGACGAGCCG
AGTGGAGACGAGACCTGACCTTCCGGAACAACCTATTCGTGGTTTTGTAA
ACGAGTCCTTGTTCTTGAAGAACTTCTTGCTGAAGGGAAAGGGATCCGAA
GAGTTCAAGACGCTAGCCATCGTGGGGAAGTTCGGAGTCGGGAAAACGAC
CTTGTGTCAGGATGTGTTCAACGACAAAGACGTGAAACAAGCTTATCTCC
CGAGGGTATGGGTGTCTATGTACAGCGGAGAAACTAAAGAAGATGAAGGA
GATCAAAAGGGAGCTGTGCTGAAGAGGATCTTGAGATCGCTTGGAGTTGA
AGATGAGGCGCTTGACAGCATCAGAACAGAAGCAGACGAAGAGAAGAGGA
AAAACGCTGAAGAAGGGAGAAGAGATGAAGAGACGGTTAAAGAGAAGGAG
CTCTTTAGGTTACTGAATGCTCTTAACTCGAATCTGTTTGGTAAGAGATA
TCTGATCGTGTTGGACGATGTCTGGGAGGATAACGAGTGGAGTCAGAGGC
TGGATGGTGAGGAGACACAACAGGAGAAAACGCATCTTTCTTGTGGGTTT
CCTAAAGGGTCTGGTGGGAGAGTGATTGTGACAAGCAGAGACGAGGGCCT
GGCCAAGAAGATAGTCGGAGAAGAAGAGAAAGTGCAGCGTCTGTTCCCGA
GATCAGACGTAGAGAGCGTGTGGGAGATCTACAAAGATGCATTTGGAGAG
CCCATGAAAGATGAAAATGGAGAAGTCGTGAAAGATGCAGCTGGAGAACC
GATGAAGGATGCCGTTGAAAAGCACGTGATAGGTGATGATGGTAGGCCAA
CAAAATGGGTAGTGAACCCGAGGTACCCAGGGAGATACAAAAAGGAGCTT
ATGGATAAGTCTGGTGGTGTTCCTTGGGCTGCTCAAATGCTGGCGAAGAT
TGAGCCTCTCAAAAATGATGAAGACAAGGACATGTAGACAAACTTGTAAA
GCAAGGATGTAATCTACTACGTATTTACTCTCTAACCTAAGGACACATTT
CAAGATTACTACTGTATTTCAAGTTTATTTTATTTTCCTACAAACTGTTA
AGTGTACTTGTAACTCGTAGAAGTGTAAACCTCTGCTGGTATTTGACAAT
AAACAATGTAATAAAGAGTTACAACACAGATGTCTGACAGTTATAAGATA
ATGTATAACGCGTCTCTAAGGCCATG back to topCoding sequence (CDS) from alignment at A01_BnaDARv10:5557676..5559051- >A01p11070.1_BnaDARv10-RA ID=A01p11070.1_BnaDARv10-RA|Name=A01p11070.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1137bp|location=Sequence derived from alignment at A01_BnaDARv10:5557676..5559051- (Brassica napus)
ATGGAACAAGAAATAAAAAGACACAGAGATCTGGTTATGGCTCTAGCTAA
TAAGAAGCGTTTGTCTGAAATTGATAAGAAGCTCGCTATGATTGAGTCTA
CTTTTAAAATAAACTATGGCTATTGGCTTAAAGGAATGATCGATGATTCA
TCATCATCAGCAACTCCTGACAGTAAAGTAACGCGATCTAAGACGAGCCG
AGTGGAGACGAGACCTGACCTTCCGGAACAACCTATTCGTGGTTTTGTAA
ACGAGTCCTTGTTCTTGAAGAACTTCTTGCTGAAGGGAAAGGGATCCGAA
GAGTTCAAGACGCTAGCCATCGTGGGGAAGTTCGGAGTCGGGAAAACGAC
CTTGTGTCAGGATGTGTTCAACGACAAAGACGTGAAACAAGCTTATCTCC
CGAGGGTATGGGTGTCTATGTACAGCGGAGAAACTAAAGAAGATGAAGGA
GATCAAAAGGGAGCTGTGCTGAAGAGGATCTTGAGATCGCTTGGAGTTGA
AGATGAGGCGCTTGACAGCATCAGAACAGAAGCAGACGAAGAGAAGAGGA
AAAACGCTGAAGAAGGGAGAAGAGATGAAGAGACGGTTAAAGAGAAGGAG
CTCTTTAGGTTACTGAATGCTCTTAACTCGAATCTGTTTGGTAAGAGATA
TCTGATCGTGTTGGACGATGTCTGGGAGGATAACGAGTGGAGTCAGAGGC
TGGATGGTGAGGAGACACAACAGGAGAAAACGCATCTTTCTTGTGGGTTT
CCTAAAGGGTCTGGTGGGAGAGTGATTGTGACAAGCAGAGACGAGGGCCT
GGCCAAGAAGATAGTCGGAGAAGAAGAGAAAGTGCAGCGTCTGTTCCCGA
GATCAGACGTAGAGAGCGTGTGGGAGATCTACAAAGATGCATTTGGAGAG
CCCATGAAAGATGAAAATGGAGAAGTCGTGAAAGATGCAGCTGGAGAACC
GATGAAGGATGCCGTTGAAAAGCACGTGATAGGTGATGATGGTAGGCCAA
CAAAATGGGTAGTGAACCCGAGGTACCCAGGGAGATACAAAAAGGAGCTT
ATGGATAAGTCTGGTGGTGTTCCTTGGGCTGCTCAAATGCTGGCGAAGAT
TGAGCCTCTCAAAAATGATGAAGACAAGGACATGTAG back to top
|