Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 799 |
| Exons | 1 |
| Cds size | 342 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p10290.1_BnaDARv10 | A01p10290.1_BnaDARv10 | Brassica napus | gene | A01_BnaDARv10 5106835..5107633 - |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340543.3205009-five_prime_UTR-A01_BnaDARv10:5106834..5106990 | 1626340543.3205009-five_prime_UTR-A01_BnaDARv10:5106834..5106990 | Brassica napus | five_prime_UTR | A01_BnaDARv10 5106835..5106990 - |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p10290.1_BnaDARv10_exon1 | A01p10290.1_BnaDARv10_exon1 | Brassica napus | exon | A01_BnaDARv10 5106835..5107633 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340543.331543-CDS-A01_BnaDARv10:5106990..5107332 | 1626340543.331543-CDS-A01_BnaDARv10:5106990..5107332 | Brassica napus | CDS | A01_BnaDARv10 5106991..5107332 - |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340543.3399725-three_prime_UTR-A01_BnaDARv10:5107332..5107633 | 1626340543.3399725-three_prime_UTR-A01_BnaDARv10:5107332..5107633 | Brassica napus | three_prime_UTR | A01_BnaDARv10 5107333..5107633 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >A01p10290.1_BnaDARv10-RA ID=A01p10290.1_BnaDARv10-RA|Name=A01p10290.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=799bp|location=Sequence derived from alignment at A01_BnaDARv10:5106835..5107633- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.
CCGACGATCGTCTCAGCTGCGATTGCGAATCGGAGCCATAGAGTATTCCT
AGGGTTCCACGAGCACTCGTCTTTGAAGCTCCGAAGACTACTACTACTAC
GTACATCATCTTTTCTCTCTCTCTGCTATTATCGTTCCTTGTTCGATTTT
GGTTTTGTTTCTATGTATCTCTTAGGCCTTGTTGCATCTCTAAGATTCAA
AGTTTGGTTATTTCCATCTCTAAGATTCAAAGTTTATAACTTTTGATTGT
TCTTCGTTTTGTGTGTAAAGCATACACAAGAACAAGAACCTGTCGTGAAA
AATGGAACAAATAGATGCAGGAGGAAGCACCACCGTCGCTGCGTCGACCT
CTGAAGACTCGAGTTTAGATCCGATAGCACGAGTGAGGAAGCTCTTGTTC
CGCCAGATGCTCGTTGGAATCAAAGACGGGAGATTCTTCCTTGGCAGTTT
CCACTGCATTGACAAACAAGGAAACATCATTCTCCAAGACACCGTTGAGT
ATCGCAGCATCAGAAGATCCTCTCCTTCCCCTACTGAACAGCGTTGTCTT
GGTATGATCCTCATCCCTGCCTCTTGCAGGACCTCTTGCCATGTTGATTG
CTCTATCGAGGAACAGCTTTCGTTGATTCAGCTCAAAGAGTAGAGCCTTG
ATGATAGAATGTCTCCGGAGCTTTGGTCTCTTCATTATGTCCTTGTATTG
TATGATGAATGATTTCACGTTACTTTGTGAAGATAAATGTATACATGCAT
TGGAAGTCTTTTGGAGTTTTATATTTACATTTAATAGAGAAGATGTTTG back to topprotein sequence of A01p10290.1_BnaDARv10-RA >A01p10290.1_BnaDARv10-PA ID=A01p10290.1_BnaDARv10-PA|Name=A01p10290.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=114bp
MEQIDAGGSTTVAASTSEDSSLDPIARVRKLLFRQMLVGIKDGRFFLGSF
HCIDKQGNIILQDTVEYRSIRRSSPSPTEQRCLGMILIPASCRTSCHVDC
SIEEQLSLIQLKE. back to topmRNA from alignment at A01_BnaDARv10:5106835..5107633- Legend: exonthree_prime_UTRpolypeptideCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >A01p10290.1_BnaDARv10-RA ID=A01p10290.1_BnaDARv10-RA|Name=A01p10290.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=799bp|location=Sequence derived from alignment at A01_BnaDARv10:5106835..5107633- (Brassica napus)
CCGACGATCGTCTCAGCTGCGATTGCGAATCGGAGCCATAGAGTATTCCT
AGGGTTCCACGAGCACTCGTCTTTGAAGCTCCGAAGACTACTACTACTAC
GTACATCATCTTTTCTCTCTCTCTGCTATTATCGTTCCTTGTTCGATTTT
GGTTTTGTTTCTATGTATCTCTTAGGCCTTGTTGCATCTCTAAGATTCAA
AGTTTGGTTATTTCCATCTCTAAGATTCAAAGTTTATAACTTTTGATTGT
TCTTCGTTTTGTGTGTAAAGCATACACAAGAACAAGAACCTGTCGTGAAA
AATGGAACAAATAGATGCAGGAGGAAGCACCACCGTCGCTGCGTCGACCT
CTGAAGACTCGAGTTTAGATCCGATAGCACGAGTGAGGAAGCTCTTGTTC
CGCCAGATGCTCGTTGGAATCAAAGACGGGAGATTCTTCCTTGGCAGTTT
CCACTGCATTGACAAACAAGGAAACATCATTCTCCAAGACACCGTTGAGT
ATCGCAGCATCAGAAGATCCTCTCCTTCCCCTACTGAACAGCGTTGTCTT
GGTATGATCCTCATCCCTGCCTCTTGCAGGACCTCTTGCCATGTTGATTG
CTCTATCGAGGAACAGCTTTCGTTGATTCAGCTCAAAGAGTAGAGCCTTG
ATGATAGAATGTCTCCGGAGCTTTGGTCTCTTCATTATGTCCTTGTATTG
TATGATGAATGATTTCACGTTACTTTGTGAAGATAAATGTATACATGCAT
TGGAAGTCTTTTGGAGTTTTATATTTACATTTAATAGAGAAGATGTTTG back to topCoding sequence (CDS) from alignment at A01_BnaDARv10:5106835..5107633- >A01p10290.1_BnaDARv10-RA ID=A01p10290.1_BnaDARv10-RA|Name=A01p10290.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=342bp|location=Sequence derived from alignment at A01_BnaDARv10:5106835..5107633- (Brassica napus)
ATGGAACAAATAGATGCAGGAGGAAGCACCACCGTCGCTGCGTCGACCTC
TGAAGACTCGAGTTTAGATCCGATAGCACGAGTGAGGAAGCTCTTGTTCC
GCCAGATGCTCGTTGGAATCAAAGACGGGAGATTCTTCCTTGGCAGTTTC
CACTGCATTGACAAACAAGGAAACATCATTCTCCAAGACACCGTTGAGTA
TCGCAGCATCAGAAGATCCTCTCCTTCCCCTACTGAACAGCGTTGTCTTG
GTATGATCCTCATCCCTGCCTCTTGCAGGACCTCTTGCCATGTTGATTGC
TCTATCGAGGAACAGCTTTCGTTGATTCAGCTCAAAGAGTAG back to top
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