A01p10090.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	A01p10090.1_BnaDARv10-RA
Unique Name	A01p10090.1_BnaDARv10-RA
Type	mRNA
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
A01p10090.1_BnaDARv10	A01p10090.1_BnaDARv10	Brassica napus	gene	A01_BnaDARv10 4984080..4987006 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340540.9767625-five_prime_UTR-A01_BnaDARv10:4984079..4984108	1626340540.9767625-five_prime_UTR-A01_BnaDARv10:4984079..4984108	Brassica napus	five_prime_UTR	A01_BnaDARv10 4984080..4984108 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p10090.1_BnaDARv10_exon1	A01p10090.1_BnaDARv10_exon1	Brassica napus	exon	A01_BnaDARv10 4984080..4984199 +
A01p10090.1_BnaDARv10_exon2	A01p10090.1_BnaDARv10_exon2	Brassica napus	exon	A01_BnaDARv10 4984278..4984627 +
A01p10090.1_BnaDARv10_exon3	A01p10090.1_BnaDARv10_exon3	Brassica napus	exon	A01_BnaDARv10 4984691..4984849 +
A01p10090.1_BnaDARv10_exon4	A01p10090.1_BnaDARv10_exon4	Brassica napus	exon	A01_BnaDARv10 4984916..4985032 +
A01p10090.1_BnaDARv10_exon5	A01p10090.1_BnaDARv10_exon5	Brassica napus	exon	A01_BnaDARv10 4985136..4985287 +
A01p10090.1_BnaDARv10_exon6	A01p10090.1_BnaDARv10_exon6	Brassica napus	exon	A01_BnaDARv10 4985370..4986119 +
A01p10090.1_BnaDARv10_exon7	A01p10090.1_BnaDARv10_exon7	Brassica napus	exon	A01_BnaDARv10 4986198..4986282 +
A01p10090.1_BnaDARv10_exon8	A01p10090.1_BnaDARv10_exon8	Brassica napus	exon	A01_BnaDARv10 4986352..4986420 +
A01p10090.1_BnaDARv10_exon9	A01p10090.1_BnaDARv10_exon9	Brassica napus	exon	A01_BnaDARv10 4986492..4986665 +
A01p10090.1_BnaDARv10_exon10	A01p10090.1_BnaDARv10_exon10	Brassica napus	exon	A01_BnaDARv10 4986755..4987006 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340540.985609-CDS-A01_BnaDARv10:4984108..4984199	1626340540.985609-CDS-A01_BnaDARv10:4984108..4984199	Brassica napus	CDS	A01_BnaDARv10 4984109..4984199 +
1626340540.9925592-CDS-A01_BnaDARv10:4984277..4984627	1626340540.9925592-CDS-A01_BnaDARv10:4984277..4984627	Brassica napus	CDS	A01_BnaDARv10 4984278..4984627 +
1626340540.9995897-CDS-A01_BnaDARv10:4984690..4984849	1626340540.9995897-CDS-A01_BnaDARv10:4984690..4984849	Brassica napus	CDS	A01_BnaDARv10 4984691..4984849 +
1626340541.0095484-CDS-A01_BnaDARv10:4984915..4985032	1626340541.0095484-CDS-A01_BnaDARv10:4984915..4985032	Brassica napus	CDS	A01_BnaDARv10 4984916..4985032 +
1626340541.017128-CDS-A01_BnaDARv10:4985135..4985287	1626340541.017128-CDS-A01_BnaDARv10:4985135..4985287	Brassica napus	CDS	A01_BnaDARv10 4985136..4985287 +
1626340541.024592-CDS-A01_BnaDARv10:4985369..4986119	1626340541.024592-CDS-A01_BnaDARv10:4985369..4986119	Brassica napus	CDS	A01_BnaDARv10 4985370..4986119 +
1626340541.0316617-CDS-A01_BnaDARv10:4986197..4986282	1626340541.0316617-CDS-A01_BnaDARv10:4986197..4986282	Brassica napus	CDS	A01_BnaDARv10 4986198..4986282 +
1626340541.0390573-CDS-A01_BnaDARv10:4986351..4986420	1626340541.0390573-CDS-A01_BnaDARv10:4986351..4986420	Brassica napus	CDS	A01_BnaDARv10 4986352..4986420 +
1626340541.0466464-CDS-A01_BnaDARv10:4986491..4986665	1626340541.0466464-CDS-A01_BnaDARv10:4986491..4986665	Brassica napus	CDS	A01_BnaDARv10 4986492..4986665 +
1626340541.0538385-CDS-A01_BnaDARv10:4986754..4986805	1626340541.0538385-CDS-A01_BnaDARv10:4986754..4986805	Brassica napus	CDS	A01_BnaDARv10 4986755..4986805 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340541.0611322-three_prime_UTR-A01_BnaDARv10:4986805..4987006	1626340541.0611322-three_prime_UTR-A01_BnaDARv10:4986805..4987006	Brassica napus	three_prime_UTR	A01_BnaDARv10 4986806..4987006 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p10090.1_BnaDARv10-RA	A01p10090.1_BnaDARv10-PA	Brassica napus	polypeptide	A01_BnaDARv10 4984109..4986805 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at A01_BnaDARv10:4984080..4987006+
coding sequence from alignment at A01_BnaDARv10:4984080..4987006+

spliced messenger RNA

>A01p10090.1_BnaDARv10-RA ID=A01p10090.1_BnaDARv10-RA|Name=A01p10090.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2228bp|location=Sequence derived from alignment at A01_BnaDARv10:4984080..4987006+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
AGGTTTCATTGATAATCATTCTTCACCAAATGAATATCCCAAATGGAGAT
TTCTCCAATGCTTCAAGTGATAACACTTCCTTCTTTTCCACCTCTCTGCC
TCTTCTTCCACAACAAAACCTCAATCCTCTTGATCAAATTGCCTCCGGGT
TAAACCATTTCAATGATGATCATGACTCACATCCAATGGATGAGGAACAG
CTTCTTGCTGGTCTAATGGATGAGATAAACTTAACCTCATTGCCAAATAC
ATTAGATGACTTGGAAGAGTATGATTTGTTTGGTAGTGGAGGAGGTCTTG
AACTAGAGTCTGACCTCCCAAGAACGAGTTTTGCTGACTCCAAAACTGCA
AATGGTATTTTCCAAAACATTGCTGGCGAACATCCTTATGGTGAACACCC
TTCAAGGACTCTCTTTGTTAGGAATATTAACAGCACCGTTGATGATTCAG
AACTCAGAGCTATCTTTGAGCAACATGGAGACATCCGAACTCTGTATACA
GCCTGCAAGCATAGGGGTTTTGTAATGGTCTCTTACTACGATATCCGTGC
TTCAAGAGCAGCTATGCGAGCGTTACAAAGCAAGCTGCTTAAAGGGAGGA
AACTTGACATACACTTCTCAATCCCTAAGGATAATCCATCAGAGAAAGAT
GTTAATCAAGGGACTCTTGTGGTATTCAACTTGGCTCCATCAGTATCAAA
CAAAGACCTAGAAAACATATTCGGAGCTTATGGAGAGATCAAGGAGATAA
GGGAAACACCAAATAAGAGGCATCACAAATTTGTTGAATTTTTTGACGTT
AGATCGGCTGAGTCAGCTCTCAAAGCTTTGAACAGGACTGACATTGCTGG
AAAGCGTATCAAGCTTGAACATAGCCGTCCTGGTGGTGCTCGTCGCAACA
TGATGTTGCAAATGAATCCAGAGTATGAGCAAGATGATTCACGCAGCTAC
CTGAATCTTTCTGACTCTCCTTTAGCCAGCTCTCCTGCTGGGAACTACTG
GGGTAACAGCCCTGTTGATCACAGTCCTCTACAAAGTCTCAGCAGGTCTC
CACTGAGTCCAACGCTTTCTTCTATTCTGAATTCTCAAAGAGTTAGCCAC
TTGGATCATCTGTTTCCAACGAGTCACAAAGCTTCTGGTTATCAGCAAAC
GCAGTCTTACGGTACTGCTTCCTCCTATGGCTCTTTGAACTCATTATCTG
GATCAGAGTTTTTGTGGGGAAGCCCTAGCTCTTCACTCTGGCCTATGAAT
CATCCGTTCTCTTCAAACGGAAAAGCTCACATGTTTCCATACTCGGCTCT
AAACGGATCCAACCATGTTGGATCCGCACCGTCTGGACTCTTTAGGAGGT
CTTCTGAGACTTCATCGATGGGTTCATCAGCTTTCAGGGGAGCAAGTGGT
AATGTAGCTCCAAGAAACATGCGTGAAGCTGGTTCCCCAAGTTTCAAAAT
GGTGTCTTCTCCAAGACATAGTCAACTGTTTACGGGCAGTGTCTCTTCTT
ACCAGTGGCCTGTTGCAACAACGGCTTCAATTGACGGTAATAACATGAAC
CAAGTGGACAGCAAGAAACAGTTTCAGCTTGACTTGAGTAAGATTATGAG
CGGTGAAGATTTACGGACAACCTTGATGATTAAAAACATCCCTAATAAGT
ATACTAGGAAGATGTTGTTAGCTGCCATTGACGAGACTAACAGAGGAACT
TATGATTTTCTCTATCTGCCTATTGATTTCAAGAATAAATGCAATGTGGG
TTATGCGTTTATCAACATGGTGTCTCCTACTTTCATCATTGCATTGTACG
AGGCCTTTGATGGGAAAAAATGGGATAAGTTCAACAGCGAGAAAGTTGCT
TCCTTGGCTTATGCCCGGATCCAAGGCAAAACCGCACTCATGGCTCACTT
CCAGAACTCAAGCTTAATGAACGAAGACAAACGTTGCCACCCTATTGTCT
TTGATGGATCAGAGTTGAGCTATCCGTTCATCATGGACATGGAGCATTCA
CAGGAGCAAAGCACACATCGAAGCTGACATACAAATGAATCTTTTATTGC
CTCTAGTTCAAACGTAAATATTCAGTTTCTAGGATGAGATGGTGATGATG
ATGATGATGATCAGTCAAAGTACTGTAAATTGATGGTTATGGTTGTCTTG
GTTTGCTTAATCATGTACATAGGAATGATTTGAGATACATCTTATTGATG
ATAAATAATGGAAGCTTTGTTTGAATGG

protein sequence of A01p10090.1_BnaDARv10-RA

>A01p10090.1_BnaDARv10-PA ID=A01p10090.1_BnaDARv10-PA|Name=A01p10090.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=666bp
MNIPNGDFSNASSDNTSFFSTSLPLLPQQNLNPLDQIASGLNHFNDDHDS
HPMDEEQLLAGLMDEINLTSLPNTLDDLEEYDLFGSGGGLELESDLPRTS
FADSKTANGIFQNIAGEHPYGEHPSRTLFVRNINSTVDDSELRAIFEQHG
DIRTLYTACKHRGFVMVSYYDIRASRAAMRALQSKLLKGRKLDIHFSIPK
DNPSEKDVNQGTLVVFNLAPSVSNKDLENIFGAYGEIKEIRETPNKRHHK
FVEFFDVRSAESALKALNRTDIAGKRIKLEHSRPGGARRNMMLQMNPEYE
QDDSRSYLNLSDSPLASSPAGNYWGNSPVDHSPLQSLSRSPLSPTLSSIL
NSQRVSHLDHLFPTSHKASGYQQTQSYGTASSYGSLNSLSGSEFLWGSPS
SSLWPMNHPFSSNGKAHMFPYSALNGSNHVGSAPSGLFRRSSETSSMGSS
AFRGASGNVAPRNMREAGSPSFKMVSSPRHSQLFTGSVSSYQWPVATTAS
IDGNNMNQVDSKKQFQLDLSKIMSGEDLRTTLMIKNIPNKYTRKMLLAAI
DETNRGTYDFLYLPIDFKNKCNVGYAFINMVSPTFIIALYEAFDGKKWDK
FNSEKVASLAYARIQGKTALMAHFQNSSLMNEDKRCHPIVFDGSELSYPF
IMDMEHSQEQSTHRS.

mRNA from alignment at A01_BnaDARv10:4984080..4987006+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>A01p10090.1_BnaDARv10-RA ID=A01p10090.1_BnaDARv10-RA|Name=A01p10090.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2927bp|location=Sequence derived from alignment at A01_BnaDARv10:4984080..4987006+ (Brassica napus)
AGGTTTCATTGATAATCATTCTTCACCAAATGAATATCCCAAATGGAGAT
TTCTCCAATGCTTCAAGTGATAACACTTCCTTCTTTTCCACCTCTCTGCC
TCTTCTTCCACAACAAAACCGTATGTACTTTTACTTAACCCACAAACCTC
CCTCTTCTTTCAAATTGTTATGTTCTAATCACTTATCTCTTCTTGCAGTC
AATCCTCTTGATCAAATTGCCTCCGGGTTAAACCATTTCAATGATGATCA
TGACTCACATCCAATGGATGAGGAACAGCTTCTTGCTGGTCTAATGGATG
AGATAAACTTAACCTCATTGCCAAATACATTAGATGACTTGGAAGAGTAT
GATTTGTTTGGTAGTGGAGGAGGTCTTGAACTAGAGTCTGACCTCCCAAG
AACGAGTTTTGCTGACTCCAAAACTGCAAATGGTATTTTCCAAAACATTG
CTGGCGAACATCCTTATGGTGAACACCCTTCAAGGACTCTCTTTGTTAGG
AATATTAACAGCACCGTTGATGATTCAGAACTCAGAGCTATCTTTGAGGT
AACTTCTCCTCTTTTTCTTTTTGTAACCATTACCATAAGTCTAATGATTG
GATCTTGGCAGCAACATGGAGACATCCGAACTCTGTATACAGCCTGCAAG
CATAGGGGTTTTGTAATGGTCTCTTACTACGATATCCGTGCTTCAAGAGC
AGCTATGCGAGCGTTACAAAGCAAGCTGCTTAAAGGGAGGAAACTTGACA
TACACTTCTCAATCCCTAAGGTTTTAAATATTCTCTCACTCCCCTAAGGT
TTAATTTACATTAATGATGTTTTTTCATTTTGATAGGATAATCCATCAGA
GAAAGATGTTAATCAAGGGACTCTTGTGGTATTCAACTTGGCTCCATCAG
TATCAAACAAAGACCTAGAAAACATATTCGGAGCTTATGGAGAGATCAAG
GAGGTGATGATGAGCTTTTGCTTGCTTTAGGTTTTTATATTTTAGAGGTT
TGCAATAAATGGTTTAACGTTTGTGTAAGTTATTATTGTTGTGACAAAAA
AAGCAGATAAGGGAAACACCAAATAAGAGGCATCACAAATTTGTTGAATT
TTTTGACGTTAGATCGGCTGAGTCAGCTCTCAAAGCTTTGAACAGGACTG
ACATTGCTGGAAAGCGTATCAAGCTTGAACATAGCCGTCCTGGTGGTGCT
CGTCGCAAGTGAGTGTTTACTAACAAAACTAACTCTGAATAAAAACTATT
ATGAACTAATATCATTTCTGTTTTTGTTTGGTTTCTTTAGCATGATGTTG
CAAATGAATCCAGAGTATGAGCAAGATGATTCACGCAGCTACCTGAATCT
TTCTGACTCTCCTTTAGCCAGCTCTCCTGCTGGGAACTACTGGGGTAACA
GCCCTGTTGATCACAGTCCTCTACAAAGTCTCAGCAGGTCTCCACTGAGT
CCAACGCTTTCTTCTATTCTGAATTCTCAAAGAGTTAGCCACTTGGATCA
TCTGTTTCCAACGAGTCACAAAGCTTCTGGTTATCAGCAAACGCAGTCTT
ACGGTACTGCTTCCTCCTATGGCTCTTTGAACTCATTATCTGGATCAGAG
TTTTTGTGGGGAAGCCCTAGCTCTTCACTCTGGCCTATGAATCATCCGTT
CTCTTCAAACGGAAAAGCTCACATGTTTCCATACTCGGCTCTAAACGGAT
CCAACCATGTTGGATCCGCACCGTCTGGACTCTTTAGGAGGTCTTCTGAG
ACTTCATCGATGGGTTCATCAGCTTTCAGGGGAGCAAGTGGTAATGTAGC
TCCAAGAAACATGCGTGAAGCTGGTTCCCCAAGTTTCAAAATGGTGTCTT
CTCCAAGACATAGTCAACTGTTTACGGGCAGTGTCTCTTCTTACCAGTGG
CCTGTTGCAACAACGGCTTCAATTGACGGTAATAACATGAACCAAGTGGA
CAGCAAGAAACAGTTTCAGCTTGACTTGAGTAAGATTATGAGCGGTGAAG
ATTTACGGACAACCTTGATGATTAAAAACATCCCTAATAAGTAAGACTTC
TTCTCTGACGACTCTGGCTATGCACCGATCATGATCTGAAATAACTCATC
TTTTTTGCTTGTTCTCAGGTATACTAGGAAGATGTTGTTAGCTGCCATTG
ACGAGACTAACAGAGGAACTTATGATTTTCTCTATCTGCCTATTGATTTC
AAGGTAAAGACCACCTTTGTTGCGTGTTTGAGTCTATAACATCATGTGAT
TTAACTTTTTCTTGTGTTGTAGAATAAATGCAATGTGGGTTATGCGTTTA
TCAACATGGTGTCTCCTACTTTCATCATTGCATTGTACGAGGTACAAAAC
CTGATTTGAATGTTTTGAGTATTGTCTGGGATGAGTCCTTATGGTTGTGA
TATGTTTGTTAGGCCTTTGATGGGAAAAAATGGGATAAGTTCAACAGCGA
GAAAGTTGCTTCCTTGGCTTATGCCCGGATCCAAGGCAAAACCGCACTCA
TGGCTCACTTCCAGAACTCAAGCTTAATGAACGAAGACAAACGTTGCCAC
CCTATTGTCTTTGATGGATCAGAGTTGAGCTATCCGGTAAACAATATTTT
ATAACAAAGACATGATCATGAAATGATTTTTTTCTTCTGAAGTTTAACTC
ATGACTCATATCTATATCTGACTAGTTCATCATGGACATGGAGCATTCAC
AGGAGCAAAGCACACATCGAAGCTGACATACAAATGAATCTTTTATTGCC
TCTAGTTCAAACGTAAATATTCAGTTTCTAGGATGAGATGGTGATGATGA
TGATGATGATCAGTCAAAGTACTGTAAATTGATGGTTATGGTTGTCTTGG
TTTGCTTAATCATGTACATAGGAATGATTTGAGATACATCTTATTGATGA
TAAATAATGGAAGCTTTGTTTGAATGG

Coding sequence (CDS) from alignment at A01_BnaDARv10:4984080..4987006+

>A01p10090.1_BnaDARv10-RA ID=A01p10090.1_BnaDARv10-RA|Name=A01p10090.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1998bp|location=Sequence derived from alignment at A01_BnaDARv10:4984080..4987006+ (Brassica napus)
ATGAATATCCCAAATGGAGATTTCTCCAATGCTTCAAGTGATAACACTTC
CTTCTTTTCCACCTCTCTGCCTCTTCTTCCACAACAAAACCTCAATCCTC
TTGATCAAATTGCCTCCGGGTTAAACCATTTCAATGATGATCATGACTCA
CATCCAATGGATGAGGAACAGCTTCTTGCTGGTCTAATGGATGAGATAAA
CTTAACCTCATTGCCAAATACATTAGATGACTTGGAAGAGTATGATTTGT
TTGGTAGTGGAGGAGGTCTTGAACTAGAGTCTGACCTCCCAAGAACGAGT
TTTGCTGACTCCAAAACTGCAAATGGTATTTTCCAAAACATTGCTGGCGA
ACATCCTTATGGTGAACACCCTTCAAGGACTCTCTTTGTTAGGAATATTA
ACAGCACCGTTGATGATTCAGAACTCAGAGCTATCTTTGAGCAACATGGA
GACATCCGAACTCTGTATACAGCCTGCAAGCATAGGGGTTTTGTAATGGT
CTCTTACTACGATATCCGTGCTTCAAGAGCAGCTATGCGAGCGTTACAAA
GCAAGCTGCTTAAAGGGAGGAAACTTGACATACACTTCTCAATCCCTAAG
GATAATCCATCAGAGAAAGATGTTAATCAAGGGACTCTTGTGGTATTCAA
CTTGGCTCCATCAGTATCAAACAAAGACCTAGAAAACATATTCGGAGCTT
ATGGAGAGATCAAGGAGATAAGGGAAACACCAAATAAGAGGCATCACAAA
TTTGTTGAATTTTTTGACGTTAGATCGGCTGAGTCAGCTCTCAAAGCTTT
GAACAGGACTGACATTGCTGGAAAGCGTATCAAGCTTGAACATAGCCGTC
CTGGTGGTGCTCGTCGCAACATGATGTTGCAAATGAATCCAGAGTATGAG
CAAGATGATTCACGCAGCTACCTGAATCTTTCTGACTCTCCTTTAGCCAG
CTCTCCTGCTGGGAACTACTGGGGTAACAGCCCTGTTGATCACAGTCCTC
TACAAAGTCTCAGCAGGTCTCCACTGAGTCCAACGCTTTCTTCTATTCTG
AATTCTCAAAGAGTTAGCCACTTGGATCATCTGTTTCCAACGAGTCACAA
AGCTTCTGGTTATCAGCAAACGCAGTCTTACGGTACTGCTTCCTCCTATG
GCTCTTTGAACTCATTATCTGGATCAGAGTTTTTGTGGGGAAGCCCTAGC
TCTTCACTCTGGCCTATGAATCATCCGTTCTCTTCAAACGGAAAAGCTCA
CATGTTTCCATACTCGGCTCTAAACGGATCCAACCATGTTGGATCCGCAC
CGTCTGGACTCTTTAGGAGGTCTTCTGAGACTTCATCGATGGGTTCATCA
GCTTTCAGGGGAGCAAGTGGTAATGTAGCTCCAAGAAACATGCGTGAAGC
TGGTTCCCCAAGTTTCAAAATGGTGTCTTCTCCAAGACATAGTCAACTGT
TTACGGGCAGTGTCTCTTCTTACCAGTGGCCTGTTGCAACAACGGCTTCA
ATTGACGGTAATAACATGAACCAAGTGGACAGCAAGAAACAGTTTCAGCT
TGACTTGAGTAAGATTATGAGCGGTGAAGATTTACGGACAACCTTGATGA
TTAAAAACATCCCTAATAAGTATACTAGGAAGATGTTGTTAGCTGCCATT
GACGAGACTAACAGAGGAACTTATGATTTTCTCTATCTGCCTATTGATTT
CAAGAATAAATGCAATGTGGGTTATGCGTTTATCAACATGGTGTCTCCTA
CTTTCATCATTGCATTGTACGAGGCCTTTGATGGGAAAAAATGGGATAAG
TTCAACAGCGAGAAAGTTGCTTCCTTGGCTTATGCCCGGATCCAAGGCAA
AACCGCACTCATGGCTCACTTCCAGAACTCAAGCTTAATGAACGAAGACA
AACGTTGCCACCCTATTGTCTTTGATGGATCAGAGTTGAGCTATCCGTTC
ATCATGGACATGGAGCATTCACAGGAGCAAAGCACACATCGAAGCTGA