A01p09100.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	A01p09100.1_BnaDARv10-RA
Unique Name	A01p09100.1_BnaDARv10-RA
Type	mRNA
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
A01p09100.1_BnaDARv10	A01p09100.1_BnaDARv10	Brassica napus	gene	A01_BnaDARv10 4222763..4224580 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p09100.1_BnaDARv10-RA	A01p09100.1_BnaDARv10-PA	Brassica napus	polypeptide	A01_BnaDARv10 4222763..4224580 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340530.4424398-CDS-A01_BnaDARv10:4222762..4223188	1626340530.4424398-CDS-A01_BnaDARv10:4222762..4223188	Brassica napus	CDS	A01_BnaDARv10 4222763..4223188 -
1626340530.4512377-CDS-A01_BnaDARv10:4223393..4223459	1626340530.4512377-CDS-A01_BnaDARv10:4223393..4223459	Brassica napus	CDS	A01_BnaDARv10 4223394..4223459 -
1626340530.458162-CDS-A01_BnaDARv10:4223537..4223603	1626340530.458162-CDS-A01_BnaDARv10:4223537..4223603	Brassica napus	CDS	A01_BnaDARv10 4223538..4223603 -
1626340530.4653864-CDS-A01_BnaDARv10:4223688..4223769	1626340530.4653864-CDS-A01_BnaDARv10:4223688..4223769	Brassica napus	CDS	A01_BnaDARv10 4223689..4223769 -
1626340530.472119-CDS-A01_BnaDARv10:4223857..4224580	1626340530.472119-CDS-A01_BnaDARv10:4223857..4224580	Brassica napus	CDS	A01_BnaDARv10 4223858..4224580 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p09100.1_BnaDARv10_exon1	A01p09100.1_BnaDARv10_exon1	Brassica napus	exon	A01_BnaDARv10 4222763..4223188 -
A01p09100.1_BnaDARv10_exon2	A01p09100.1_BnaDARv10_exon2	Brassica napus	exon	A01_BnaDARv10 4223394..4223459 -
A01p09100.1_BnaDARv10_exon3	A01p09100.1_BnaDARv10_exon3	Brassica napus	exon	A01_BnaDARv10 4223538..4223603 -
A01p09100.1_BnaDARv10_exon4	A01p09100.1_BnaDARv10_exon4	Brassica napus	exon	A01_BnaDARv10 4223689..4223769 -
A01p09100.1_BnaDARv10_exon5	A01p09100.1_BnaDARv10_exon5	Brassica napus	exon	A01_BnaDARv10 4223858..4224580 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at A01_BnaDARv10:4222763..4224580-
coding sequence from alignment at A01_BnaDARv10:4222763..4224580-

spliced messenger RNA

>A01p09100.1_BnaDARv10-RA ID=A01p09100.1_BnaDARv10-RA|Name=A01p09100.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1362bp|location=Sequence derived from alignment at A01_BnaDARv10:4222763..4224580- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
GTTAGGGGTGAAGATGATATAGTGGAGCTCTTATGGAATAGCGGGCATGT
TGTTGAAAGCAGTCAGGCACAGAGACCACCTGTTCCTCCCCCCATTCTCC
GAGGTAGCGGTAGTGGAGGCGGTAACGGAGAAGAAAGTGCTCCGCTTCAG
CTTCCGCTTCCGCAGCCTACGCCTCTCCATAGTCATCACCAGCAACCGTC
TGATCAGAATCTTCTCATACATGAAGATGAAATGGCGTCTTGGCTTCTCC
ATCATCCTCTCCGCGAAGAAGACGAACTGCACTCCCATCTTTTTTACTCC
GTCTCTCTCACACCACCACTACCGTTACAACCACAGCCACCAGCAGCAGC
TAGTGCTAGTTACACTCCAACGGTGGAGAGACCGATGGGTGAGGTCATCG
CCGGGAGAAGGGCGGAGAGCTTCTTCAACTTCTCGAGGCTAAGAGGGAAT
AGAGTTGAAGCAGCAGCAGCAGGTGCACAGTGGGTTAAAGATTCAACGCA
GGTGGGATCAAGCGTGACCCCGACGTCTCCTGCACCCGAGTCCTGTCTGA
CACCAATGACGTTCACTGGCGGAGTGGCGCAGACTTTTGCAGTCCCCAGT
CTTAGTCGGAAGGTGGTTGAGACGGAGACAGAACCGGCTCAGATAAAACC
ATCGACTGAGACTACGGAAGCTGCGGATGAGAGGAAGCGTAAAGAGAGAG
AAGAAGCCGCTGAAGATACTGAGGAAACTGGTGAAGAAGAAGCTCGTGGC
TCAACTTCTAGGAAGAGGTCACGCGCTGCGGAAATGCATAACATCTCCGA
AAGGAGAAGGAGAGAAAAGATCAACGAGAAGCTCAAGGCTCTCCAAGAAC
TCATTCCTCGCTGCAACAAGACTGATAAAGCTTCAATGCTGGAAGATGCT
ATCGAGTACGTTAAGTCGCTACAGCTGCAAATACAGATGATGTCAATGGG
AGGCGGGGGTATGATGCCGATGATGTATAATCCAAACATGCAATGTTTCA
TGGCCCCCTCGGCAATGGGAATGAACCGGCCTCCGTTTATACCTTTCCCC
GGTACTGCTTTTCCTAGGCCGCCGGCTCACATGGCTGGTCTAGGCCCACC
TTATCCAGCACCACCGCGATATCCTTTTCCAAACGTGCATCAGCCTGACC
CGAACCAGCCTCAGTTTCCGAGTTACTTGAATCCTTACAGCCAGTTTGTT
GGTCTCCAACAAATGCAACAACCTCCTCCTCCATTGCAGGTATATTTTTT
TTTTTTTTACATTATCCATTGTGCTTTATATTCCTATGTTCCTTACAATG
GTAGATGCTCACAGGACGGTGTTTTAAAATGTTTTAATAGAATCAAACAA
CATCACATATGA

protein sequence of A01p09100.1_BnaDARv10-RA

>A01p09100.1_BnaDARv10-PA ID=A01p09100.1_BnaDARv10-PA|Name=A01p09100.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=454bp
VRGEDDIVELLWNSGHVVESSQAQRPPVPPPILRGSGSGGGNGEESAPLQ
LPLPQPTPLHSHHQQPSDQNLLIHEDEMASWLLHHPLREEDELHSHLFYS
VSLTPPLPLQPQPPAAASASYTPTVERPMGEVIAGRRAESFFNFSRLRGN
RVEAAAAGAQWVKDSTQVGSSVTPTSPAPESCLTPMTFTGGVAQTFAVPS
LSRKVVETETEPAQIKPSTETTEAADERKRKEREEAAEDTEETGEEEARG
STSRKRSRAAEMHNISERRRREKINEKLKALQELIPRCNKTDKASMLEDA
IEYVKSLQLQIQMMSMGGGGMMPMMYNPNMQCFMAPSAMGMNRPPFIPFP
GTAFPRPPAHMAGLGPPYPAPPRYPFPNVHQPDPNQPQFPSYLNPYSQFV
GLQQMQQPPPPLQVYFFFFYIIHCALYSYVPYNGRCSQDGVLKCFNRIKQ
HHI.

mRNA from alignment at A01_BnaDARv10:4222763..4224580-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>A01p09100.1_BnaDARv10-RA ID=A01p09100.1_BnaDARv10-RA|Name=A01p09100.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1818bp|location=Sequence derived from alignment at A01_BnaDARv10:4222763..4224580- (Brassica napus)
GTTAGGGGTGAAGATGATATAGTGGAGCTCTTATGGAATAGCGGGCATGT
TGTTGAAAGCAGTCAGGCACAGAGACCACCTGTTCCTCCCCCCATTCTCC
GAGGTAGCGGTAGTGGAGGCGGTAACGGAGAAGAAAGTGCTCCGCTTCAG
CTTCCGCTTCCGCAGCCTACGCCTCTCCATAGTCATCACCAGCAACCGTC
TGATCAGAATCTTCTCATACATGAAGATGAAATGGCGTCTTGGCTTCTCC
ATCATCCTCTCCGCGAAGAAGACGAACTGCACTCCCATCTTTTTTACTCC
GTCTCTCTCACACCACCACTACCGTTACAACCACAGCCACCAGCAGCAGC
TAGTGCTAGTTACACTCCAACGGTGGAGAGACCGATGGGTGAGGTCATCG
CCGGGAGAAGGGCGGAGAGCTTCTTCAACTTCTCGAGGCTAAGAGGGAAT
AGAGTTGAAGCAGCAGCAGCAGGTGCACAGTGGGTTAAAGATTCAACGCA
GGTGGGATCAAGCGTGACCCCGACGTCTCCTGCACCCGAGTCCTGTCTGA
CACCAATGACGTTCACTGGCGGAGTGGCGCAGACTTTTGCAGTCCCCAGT
CTTAGTCGGAAGGTGGTTGAGACGGAGACAGAACCGGCTCAGATAAAACC
ATCGACTGAGACTACGGAAGCTGCGGATGAGAGGAAGCGTAAAGAGAGAG
AAGAAGCCGCTGAAGATACTGAGGTAAGTCAAAGCATGGAGGCGCGCATG
TTAGTCACTTGTCACATGCAGTTTCGCAGTCTCATGGTCTTATGGTTTCT
TGGCGTTACAGGAAACTGGTGAAGAAGAAGCTCGTGGCTCAACTTCTAGG
AAGAGGTCACGCGCTGCGGAAATGCATAACATCTCCGAAAGGGTTCTTCA
CATTATCCTTTCTTCACTTTCAAGCAACACATGTAATGCCTCTCCTGTTT
CATCTCACTTTTCTTTTTTTGTAACAGAGAAGGAGAGAAAAGATCAACGA
GAAGCTCAAGGCTCTCCAAGAACTCATTCCTCGCTGCAACAAGGTTAGTT
TTATACTTGCTCATCAAGGTAAGGTTGATGATTCTGACTGAGATCTCGTG
TTCTGCTTTGACTGTGAACAGACTGATAAAGCTTCAATGCTGGAAGATGC
TATCGAGTACGTTAAGTCGCTACAGCTGCAAATACAGGTATAAGACCGTC
TCATAGAAGAGATATGCAAAATATATAATAAGTCGTCTCTACTAGGAAAC
AATGGTACTTCGTCTAGATGGATGGACTTTGATAGCTGATCGCTTCTTGC
ATGTCAATGAACTTGCTCCTCACGTTTTACAGCGTTAAGAAGAAGGATCA
TGACCAAAGATTTCAACTAATCCCATGAATCAAAAAATGCAGATGATGTC
AATGGGAGGCGGGGGTATGATGCCGATGATGTATAATCCAAACATGCAAT
GTTTCATGGCCCCCTCGGCAATGGGAATGAACCGGCCTCCGTTTATACCT
TTCCCCGGTACTGCTTTTCCTAGGCCGCCGGCTCACATGGCTGGTCTAGG
CCCACCTTATCCAGCACCACCGCGATATCCTTTTCCAAACGTGCATCAGC
CTGACCCGAACCAGCCTCAGTTTCCGAGTTACTTGAATCCTTACAGCCAG
TTTGTTGGTCTCCAACAAATGCAACAACCTCCTCCTCCATTGCAGGTATA
TTTTTTTTTTTTTTACATTATCCATTGTGCTTTATATTCCTATGTTCCTT
ACAATGGTAGATGCTCACAGGACGGTGTTTTAAAATGTTTTAATAGAATC
AAACAACATCACATATGA

Coding sequence (CDS) from alignment at A01_BnaDARv10:4222763..4224580-

>A01p09100.1_BnaDARv10-RA ID=A01p09100.1_BnaDARv10-RA|Name=A01p09100.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1362bp|location=Sequence derived from alignment at A01_BnaDARv10:4222763..4224580- (Brassica napus)
GTTAGGGGTGAAGATGATATAGTGGAGCTCTTATGGAATAGCGGGCATGT
TGTTGAAAGCAGTCAGGCACAGAGACCACCTGTTCCTCCCCCCATTCTCC
GAGGTAGCGGTAGTGGAGGCGGTAACGGAGAAGAAAGTGCTCCGCTTCAG
CTTCCGCTTCCGCAGCCTACGCCTCTCCATAGTCATCACCAGCAACCGTC
TGATCAGAATCTTCTCATACATGAAGATGAAATGGCGTCTTGGCTTCTCC
ATCATCCTCTCCGCGAAGAAGACGAACTGCACTCCCATCTTTTTTACTCC
GTCTCTCTCACACCACCACTACCGTTACAACCACAGCCACCAGCAGCAGC
TAGTGCTAGTTACACTCCAACGGTGGAGAGACCGATGGGTGAGGTCATCG
CCGGGAGAAGGGCGGAGAGCTTCTTCAACTTCTCGAGGCTAAGAGGGAAT
AGAGTTGAAGCAGCAGCAGCAGGTGCACAGTGGGTTAAAGATTCAACGCA
GGTGGGATCAAGCGTGACCCCGACGTCTCCTGCACCCGAGTCCTGTCTGA
CACCAATGACGTTCACTGGCGGAGTGGCGCAGACTTTTGCAGTCCCCAGT
CTTAGTCGGAAGGTGGTTGAGACGGAGACAGAACCGGCTCAGATAAAACC
ATCGACTGAGACTACGGAAGCTGCGGATGAGAGGAAGCGTAAAGAGAGAG
AAGAAGCCGCTGAAGATACTGAGGAAACTGGTGAAGAAGAAGCTCGTGGC
TCAACTTCTAGGAAGAGGTCACGCGCTGCGGAAATGCATAACATCTCCGA
AAGGAGAAGGAGAGAAAAGATCAACGAGAAGCTCAAGGCTCTCCAAGAAC
TCATTCCTCGCTGCAACAAGACTGATAAAGCTTCAATGCTGGAAGATGCT
ATCGAGTACGTTAAGTCGCTACAGCTGCAAATACAGATGATGTCAATGGG
AGGCGGGGGTATGATGCCGATGATGTATAATCCAAACATGCAATGTTTCA
TGGCCCCCTCGGCAATGGGAATGAACCGGCCTCCGTTTATACCTTTCCCC
GGTACTGCTTTTCCTAGGCCGCCGGCTCACATGGCTGGTCTAGGCCCACC
TTATCCAGCACCACCGCGATATCCTTTTCCAAACGTGCATCAGCCTGACC
CGAACCAGCCTCAGTTTCCGAGTTACTTGAATCCTTACAGCCAGTTTGTT
GGTCTCCAACAAATGCAACAACCTCCTCCTCCATTGCAGGTATATTTTTT
TTTTTTTTACATTATCCATTGTGCTTTATATTCCTATGTTCCTTACAATG
GTAGATGCTCACAGGACGGTGTTTTAAAATGTTTTAATAGAATCAAACAA
CATCACATATGA