Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 718 |
| Exons | 8 |
| Cds size | 534 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p09090.1_BnaDARv10 | A01p09090.1_BnaDARv10 | Brassica napus | gene | A01_BnaDARv10 4221063..4222508 + |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340530.155582-five_prime_UTR-A01_BnaDARv10:4221062..4221137 | 1626340530.155582-five_prime_UTR-A01_BnaDARv10:4221062..4221137 | Brassica napus | five_prime_UTR | A01_BnaDARv10 4221063..4221137 + |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p09090.1_BnaDARv10_exon1 | A01p09090.1_BnaDARv10_exon1 | Brassica napus | exon | A01_BnaDARv10 4221063..4221220 + |
| A01p09090.1_BnaDARv10_exon2 | A01p09090.1_BnaDARv10_exon2 | Brassica napus | exon | A01_BnaDARv10 4221300..4221363 + |
| A01p09090.1_BnaDARv10_exon3 | A01p09090.1_BnaDARv10_exon3 | Brassica napus | exon | A01_BnaDARv10 4221511..4221550 + |
| A01p09090.1_BnaDARv10_exon4 | A01p09090.1_BnaDARv10_exon4 | Brassica napus | exon | A01_BnaDARv10 4221691..4221765 + |
| A01p09090.1_BnaDARv10_exon5 | A01p09090.1_BnaDARv10_exon5 | Brassica napus | exon | A01_BnaDARv10 4221862..4221954 + |
| A01p09090.1_BnaDARv10_exon6 | A01p09090.1_BnaDARv10_exon6 | Brassica napus | exon | A01_BnaDARv10 4222042..4222130 + |
| A01p09090.1_BnaDARv10_exon7 | A01p09090.1_BnaDARv10_exon7 | Brassica napus | exon | A01_BnaDARv10 4222212..4222262 + |
| A01p09090.1_BnaDARv10_exon8 | A01p09090.1_BnaDARv10_exon8 | Brassica napus | exon | A01_BnaDARv10 4222361..4222508 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340530.2295864-CDS-A01_BnaDARv10:4221137..4221220 | 1626340530.2295864-CDS-A01_BnaDARv10:4221137..4221220 | Brassica napus | CDS | A01_BnaDARv10 4221138..4221220 + |
| 1626340530.2434251-CDS-A01_BnaDARv10:4221299..4221363 | 1626340530.2434251-CDS-A01_BnaDARv10:4221299..4221363 | Brassica napus | CDS | A01_BnaDARv10 4221300..4221363 + |
| 1626340530.2563038-CDS-A01_BnaDARv10:4221510..4221550 | 1626340530.2563038-CDS-A01_BnaDARv10:4221510..4221550 | Brassica napus | CDS | A01_BnaDARv10 4221511..4221550 + |
| 1626340530.268584-CDS-A01_BnaDARv10:4221690..4221765 | 1626340530.268584-CDS-A01_BnaDARv10:4221690..4221765 | Brassica napus | CDS | A01_BnaDARv10 4221691..4221765 + |
| 1626340530.280106-CDS-A01_BnaDARv10:4221861..4221954 | 1626340530.280106-CDS-A01_BnaDARv10:4221861..4221954 | Brassica napus | CDS | A01_BnaDARv10 4221862..4221954 + |
| 1626340530.2914498-CDS-A01_BnaDARv10:4222041..4222130 | 1626340530.2914498-CDS-A01_BnaDARv10:4222041..4222130 | Brassica napus | CDS | A01_BnaDARv10 4222042..4222130 + |
| 1626340530.30301-CDS-A01_BnaDARv10:4222211..4222262 | 1626340530.30301-CDS-A01_BnaDARv10:4222211..4222262 | Brassica napus | CDS | A01_BnaDARv10 4222212..4222262 + |
| 1626340530.3145764-CDS-A01_BnaDARv10:4222360..4222399 | 1626340530.3145764-CDS-A01_BnaDARv10:4222360..4222399 | Brassica napus | CDS | A01_BnaDARv10 4222361..4222399 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340530.328698-three_prime_UTR-A01_BnaDARv10:4222399..4222508 | 1626340530.328698-three_prime_UTR-A01_BnaDARv10:4222399..4222508 | Brassica napus | three_prime_UTR | A01_BnaDARv10 4222400..4222508 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >A01p09090.1_BnaDARv10-RA ID=A01p09090.1_BnaDARv10-RA|Name=A01p09090.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=718bp|location=Sequence derived from alignment at A01_BnaDARv10:4221063..4222508+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.
GCATTACCCTCTTGAGAGGGGTTTTCTCTATACCCTGAGTCGCGTCGCTT
GCTGAGGTAACAGACAGACAGAGAGATGTGTCCTCGAGCTGCTCCGACAT
GCGAAATATGCGAGAAAGTTGTATCCAAGTACAAGTGTCCCTCTTGTCTT
GTTCCTTACTGTTCCTTGGGTTGTTTCAAGAAGCATAAAGGCAAGTTATT
TTTTAACTCTCACCTAAAAAGGACTCCATGTGCTAAACCTTCTTCAACCG
AGGAGAAGCCAGCAGCTTCTCCAGCAAAGGAAGTCTCGGTAGTGGAAAAC
AAAGATGTGGTAGCAAAGACAGAGCACAAGGCTAGTGCTTCATCTGCAGC
AAAGGAAGTTCCGGTGGCGAGACCGATAACTGTGGAGGAAGAAAAGTATG
TTGTAGAGAAGACACAGCTCGAGGCTATCGCTTTGTCTAGTGAAATCAGA
GAAGCTCTAAAGGATGAAGCCCTTCAGAAACTCATCTCCAGTATCGATAG
TTCCTCCAACCCTCTGCAGGAACTCGATGAAGCAATGGGAGTAGAAGCTT
TCCGCTTACTCACAGAAAAGATTCTATCGAACATTTCCAAGAGTAATGAC
AAGCAATGATCCTAGTCCCAGCGTCCAAACAAAAGTTCTAGTAGCACTCT
TGATTATTGTTTTCGTTACAAAAGTTGTAGTTGCTGGAGAGAAATATTCA
TTGGCCTAAAACAAAAAA back to topprotein sequence of A01p09090.1_BnaDARv10-RA >A01p09090.1_BnaDARv10-PA ID=A01p09090.1_BnaDARv10-PA|Name=A01p09090.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=178bp
MCPRAAPTCEICEKVVSKYKCPSCLVPYCSLGCFKKHKGKLFFNSHLKRT
PCAKPSSTEEKPAASPAKEVSVVENKDVVAKTEHKASASSAAKEVPVARP
ITVEEEKYVVEKTQLEAIALSSEIREALKDEALQKLISSIDSSSNPLQEL
DEAMGVEAFRLLTEKILSNISKSNDKQ. back to topmRNA from alignment at A01_BnaDARv10:4221063..4222508+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >A01p09090.1_BnaDARv10-RA ID=A01p09090.1_BnaDARv10-RA|Name=A01p09090.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1446bp|location=Sequence derived from alignment at A01_BnaDARv10:4221063..4222508+ (Brassica napus)
GCATTACCCTCTTGAGAGGGGTTTTCTCTATACCCTGAGTCGCGTCGCTT
GCTGAGGTAACAGACAGACAGAGAGATGTGTCCTCGAGCTGCTCCGACAT
GCGAAATATGCGAGAAAGTTGTATCCAAGTACAAGTGTCCCTCTTGTCTT
GTTCCTTAGTAAGTCTTTCTTCTCTTTCATCTAGCTGTCGTTTTTTTTGG
CATTGTCATTGATATTACTTCGTTCTGTGTCCTGCAGCTGTTCCTTGGGT
TGTTTCAAGAAGCATAAAGGCAAGTTATTTTTTAACTCTCACCTAAAAAG
GGTTTTGTCTTTTGTAATTGTGAATTGGATTAGTGTCTCTTGATTGTACC
CCCAAAGAGAAGTAATCTGTTTTGTGCCTCATTGAAGTTATAGTCTTAGT
TTAAGTTGATGTGAGCTTTAACTTTGTAATCTGATCAATGATGCAGAGAC
TCCATGTGCTAAACCTTCTTCAACCGAGGAGAAGCCAGGTTAGTCATTGT
GATTGTCTCTTGGTTTGTTTGAGTTTGCATATCTGTGATTGGTTCATTCG
ATTAGTAGCATAGTATGTTTCCTTTAATTTCATTTCTTTGGTCAGTTGTT
TAGTGTCAATCATGGTCTTGTTTTGTAGCAGCTTCTCCAGCAAAGGAAGT
CTCGGTAGTGGAAAACAAAGATGTGGTAGCAAAGACAGAGCACAAGGCTA
GTGGTATGTCTCTTCCAACGTAGCTAGTGATGCCTAGCTAGCATCAGACA
ATAAACGTTTGAACTTTGGGTTGAGTCACATTACCTGTGTGTTTTGTAGC
TTCATCTGCAGCAAAGGAAGTTCCGGTGGCGAGACCGATAACTGTGGAGG
AAGAAAAGTATGTTGTAGAGAAGACACAGCTCGAGGCTATCGGTAATGTT
CTCCCAAATAATTGGCGAGTTTGGAATAGATGAATCTTTGTCTTCATAAG
CCATTGCTTAATTTAGAAACATTGTGCAGCTTTGTCTAGTGAAATCAGAG
AAGCTCTAAAGGATGAAGCCCTTCAGAAACTCATCTCCAGTATCGATAGT
TCCTCCAACCCTCTGCAGGTAAGCTCATCTACACCGTCATGTATTCTAAA
AGATTCAAACCTTTTCGATGTTATTGAAAGCTGTTTGTGAATGTATAAGG
AACTCGATGAAGCAATGGGAGTAGAAGCTTTCCGCTTACTCACAGAAAAG
GTACACTCTCTCAAGCCTTTTATCTTCTTTCCAAGAACTTGCAAAGAGTA
AATAAATGTCCAGGATCTGCTAAGTTGTCCTCACCTTGTTAATTTCAGAT
TCTATCGAACATTTCCAAGAGTAATGACAAGCAATGATCCTAGTCCCAGC
GTCCAAACAAAAGTTCTAGTAGCACTCTTGATTATTGTTTTCGTTACAAA
AGTTGTAGTTGCTGGAGAGAAATATTCATTGGCCTAAAACAAAAAA back to topCoding sequence (CDS) from alignment at A01_BnaDARv10:4221063..4222508+ >A01p09090.1_BnaDARv10-RA ID=A01p09090.1_BnaDARv10-RA|Name=A01p09090.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=534bp|location=Sequence derived from alignment at A01_BnaDARv10:4221063..4222508+ (Brassica napus)
ATGTGTCCTCGAGCTGCTCCGACATGCGAAATATGCGAGAAAGTTGTATC
CAAGTACAAGTGTCCCTCTTGTCTTGTTCCTTACTGTTCCTTGGGTTGTT
TCAAGAAGCATAAAGGCAAGTTATTTTTTAACTCTCACCTAAAAAGGACT
CCATGTGCTAAACCTTCTTCAACCGAGGAGAAGCCAGCAGCTTCTCCAGC
AAAGGAAGTCTCGGTAGTGGAAAACAAAGATGTGGTAGCAAAGACAGAGC
ACAAGGCTAGTGCTTCATCTGCAGCAAAGGAAGTTCCGGTGGCGAGACCG
ATAACTGTGGAGGAAGAAAAGTATGTTGTAGAGAAGACACAGCTCGAGGC
TATCGCTTTGTCTAGTGAAATCAGAGAAGCTCTAAAGGATGAAGCCCTTC
AGAAACTCATCTCCAGTATCGATAGTTCCTCCAACCCTCTGCAGGAACTC
GATGAAGCAATGGGAGTAGAAGCTTTCCGCTTACTCACAGAAAAGATTCT
ATCGAACATTTCCAAGAGTAATGACAAGCAATGA back to top
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