Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1201 |
| Exons | 5 |
| Cds size | 873 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p08920.1_BnaDARv10 | A01p08920.1_BnaDARv10 | Brassica napus | gene | A01_BnaDARv10 4111636..4113260 + |
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340527.546709-five_prime_UTR-A01_BnaDARv10:4111635..4111663 | 1626340527.546709-five_prime_UTR-A01_BnaDARv10:4111635..4111663 | Brassica napus | five_prime_UTR | A01_BnaDARv10 4111636..4111663 + |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p08920.1_BnaDARv10_exon1 | A01p08920.1_BnaDARv10_exon1 | Brassica napus | exon | A01_BnaDARv10 4111636..4112034 + |
| A01p08920.1_BnaDARv10_exon2 | A01p08920.1_BnaDARv10_exon2 | Brassica napus | exon | A01_BnaDARv10 4112123..4112382 + |
| A01p08920.1_BnaDARv10_exon3 | A01p08920.1_BnaDARv10_exon3 | Brassica napus | exon | A01_BnaDARv10 4112455..4112596 + |
| A01p08920.1_BnaDARv10_exon4 | A01p08920.1_BnaDARv10_exon4 | Brassica napus | exon | A01_BnaDARv10 4112707..4112768 + |
| A01p08920.1_BnaDARv10_exon5 | A01p08920.1_BnaDARv10_exon5 | Brassica napus | exon | A01_BnaDARv10 4112923..4113260 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340527.5537908-CDS-A01_BnaDARv10:4111663..4112034 | 1626340527.5537908-CDS-A01_BnaDARv10:4111663..4112034 | Brassica napus | CDS | A01_BnaDARv10 4111664..4112034 + |
| 1626340527.5598674-CDS-A01_BnaDARv10:4112122..4112382 | 1626340527.5598674-CDS-A01_BnaDARv10:4112122..4112382 | Brassica napus | CDS | A01_BnaDARv10 4112123..4112382 + |
| 1626340527.5678241-CDS-A01_BnaDARv10:4112454..4112596 | 1626340527.5678241-CDS-A01_BnaDARv10:4112454..4112596 | Brassica napus | CDS | A01_BnaDARv10 4112455..4112596 + |
| 1626340527.5738823-CDS-A01_BnaDARv10:4112706..4112768 | 1626340527.5738823-CDS-A01_BnaDARv10:4112706..4112768 | Brassica napus | CDS | A01_BnaDARv10 4112707..4112768 + |
| 1626340527.5799062-CDS-A01_BnaDARv10:4112922..4112960 | 1626340527.5799062-CDS-A01_BnaDARv10:4112922..4112960 | Brassica napus | CDS | A01_BnaDARv10 4112923..4112960 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340527.5862846-three_prime_UTR-A01_BnaDARv10:4112960..4113260 | 1626340527.5862846-three_prime_UTR-A01_BnaDARv10:4112960..4113260 | Brassica napus | three_prime_UTR | A01_BnaDARv10 4112961..4113260 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >A01p08920.1_BnaDARv10-RA ID=A01p08920.1_BnaDARv10-RA|Name=A01p08920.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1201bp|location=Sequence derived from alignment at A01_BnaDARv10:4111636..4113260+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.
AGTTACTCCACATTCATCATACTTGAGAATGTCTGAATCCGTAGCAGCAG
AGCATGATTACATAGGTTTGTCCATGGAAGCATCACAAATGTCTGACAAC
AAAACCAAAACCAGAGACAACAACAACAACAAAAACGACGACGTTCTGAA
TTTCAAAGCAACCGAGTTAAGACTCGGTTTACCCGGTTCTGAGTCACCGG
AGCGAGTTGACCAGCGGTTCTTGCCTCTCAAGAGCTCATGTCCAGTGTCA
GGTGCCAAAAGGGTGTTTTCCGACGCCATTAACGGGTCTACCAAATGGGT
CTTCTCTCCTGGATCCGCTACTGATGTCAAAGACATTAAACCGGCAGTTC
CGGTTAAGGAGAAGAAGAGCTCTGCTGCAGCAGCACCTCCAGCTTCCAAG
GCACAAGTTGTGGGTTGGCCACCGATTAGATCATTCAGGAAGAACACAAT
GGCTTCTTCTCAATCTCAGAAACAAGGTGGTGGTGATAATAATAACTCAG
AGACTGATGGAGAAGCAAAGTCTGGAGCTGAGCCTTGCTTGTATGTTAAA
GTGAGCATGGAAGGTGCTCCTTACTTGAGGAAAATCGATCTCAAGACTTA
CAAGAGCTACGTTGAGCTCTCTTCTGCTCTTGAGGAGATGTTCAGCTGCT
TCACTATTGGTCAGTTTGGGTCTCACGGAGGGTGTGGCCGAGATGGGTTA
AACGAGAGTCGCTTGACCGATCTCTTGCGTGGTTCTGAGTATGTTGTTAC
CTATGAAGACAAAGACAGTGACTGGATGTTGGTTGGTGATGTCCCTTGGG
AAATGTTTATATGCTCCTGCAAGAAGCTGAGGATCATGAAGAGCTCTGAG
GCTATAGGCTTAGCTCCAAGGGTGATGGAGAAATGCAGAAGCCGGAACTA
GTAAATGTGATGATAAAATGATATGGAAGAAAGAAAAAGATGTTATTAAG
AAATGTAATAGCCATTTTGTTTTCTAAGTATTCTCAGTGTGTTTTGTGTG
CTTAAGAGTGATGATGTTTGATCTTTCTTGAAACAGCCTCTACTAAGTTC
TAATAAGGCCTCTCCCTATGTCTCCAATCCATCAAATGGGTTTTGTGTAT
GTGTGTTTTTGCTAAGTAAGACTTCATAACTCATATGTATAAAAAGTTTG
TTAGTGTGTAAACCAGATGCAGTTTTTAAACTTCATATCGATGTAATCTC
T back to topprotein sequence of A01p08920.1_BnaDARv10-RA >A01p08920.1_BnaDARv10-PA ID=A01p08920.1_BnaDARv10-PA|Name=A01p08920.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=291bp
MSESVAAEHDYIGLSMEASQMSDNKTKTRDNNNNKNDDVLNFKATELRLG
LPGSESPERVDQRFLPLKSSCPVSGAKRVFSDAINGSTKWVFSPGSATDV
KDIKPAVPVKEKKSSAAAAPPASKAQVVGWPPIRSFRKNTMASSQSQKQG
GGDNNNSETDGEAKSGAEPCLYVKVSMEGAPYLRKIDLKTYKSYVELSSA
LEEMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWM
LVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSRN. back to topmRNA from alignment at A01_BnaDARv10:4111636..4113260+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >A01p08920.1_BnaDARv10-RA ID=A01p08920.1_BnaDARv10-RA|Name=A01p08920.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1625bp|location=Sequence derived from alignment at A01_BnaDARv10:4111636..4113260+ (Brassica napus)
AGTTACTCCACATTCATCATACTTGAGAATGTCTGAATCCGTAGCAGCAG
AGCATGATTACATAGGTTTGTCCATGGAAGCATCACAAATGTCTGACAAC
AAAACCAAAACCAGAGACAACAACAACAACAAAAACGACGACGTTCTGAA
TTTCAAAGCAACCGAGTTAAGACTCGGTTTACCCGGTTCTGAGTCACCGG
AGCGAGTTGACCAGCGGTTCTTGCCTCTCAAGAGCTCATGTCCAGTGTCA
GGTGCCAAAAGGGTGTTTTCCGACGCCATTAACGGGTCTACCAAATGGGT
CTTCTCTCCTGGATCCGCTACTGATGTCAAAGACATTAAACCGGCAGTTC
CGGTTAAGGAGAAGAAGAGCTCTGCTGCAGCAGCACCTCCAGCTTCCAAG
TAAGATATATAAAAAAAAAAAAGCTCTCTCCTTTCTACTCAGACATCTCT
GTTTTAGAGCTTTAATGATGTTTCTTTGTTGGAGCAGGGCACAAGTTGTG
GGTTGGCCACCGATTAGATCATTCAGGAAGAACACAATGGCTTCTTCTCA
ATCTCAGAAACAAGGTGGTGGTGATAATAATAACTCAGAGACTGATGGAG
AAGCAAAGTCTGGAGCTGAGCCTTGCTTGTATGTTAAAGTGAGCATGGAA
GGTGCTCCTTACTTGAGGAAAATCGATCTCAAGACTTACAAGAGCTACGT
TGAGCTCTCTTCTGCTCTTGAGGAGATGTTCAGCTGCTTCACTATTGGTA
TAGTTTCTAACTCTCTTTCATTGAAGATGATAATACATGTGTGTGAGTGA
GTTGTTTCATTTTCTACAGGTCAGTTTGGGTCTCACGGAGGGTGTGGCCG
AGATGGGTTAAACGAGAGTCGCTTGACCGATCTCTTGCGTGGTTCTGAGT
ATGTTGTTACCTATGAAGACAAAGACAGTGACTGGATGTTGGTTGGTGAT
GTCCCTTGGGAGTAAGTCTTTGATTTTGCTCAATTTTAGAAACCACTAAG
ATCAATCAACAACTTAAGCTTAACCAAAGAAGATAGATCAGTGAAACTCT
TTACTGTCTTTTTCTCTGCAGAATGTTTATATGCTCCTGCAAGAAGCTGA
GGATCATGAAGAGCTCTGAGGCTATAGGCTTAGGTTAGTCTTCCTTCTCT
ACTCTTGTTCTACGCCGATCACCTGCTCCTTAAACTTTTCTTAGTGAGGA
ATAGCTCAGAAAGGATACCACTTGGTCCCTTCCGAGCTCTTGAAACACTA
AGAACTGTCCCTAACACAAATCTTGTTTGTTTTGCAGCTCCAAGGGTGAT
GGAGAAATGCAGAAGCCGGAACTAGTAAATGTGATGATAAAATGATATGG
AAGAAAGAAAAAGATGTTATTAAGAAATGTAATAGCCATTTTGTTTTCTA
AGTATTCTCAGTGTGTTTTGTGTGCTTAAGAGTGATGATGTTTGATCTTT
CTTGAAACAGCCTCTACTAAGTTCTAATAAGGCCTCTCCCTATGTCTCCA
ATCCATCAAATGGGTTTTGTGTATGTGTGTTTTTGCTAAGTAAGACTTCA
TAACTCATATGTATAAAAAGTTTGTTAGTGTGTAAACCAGATGCAGTTTT
TAAACTTCATATCGATGTAATCTCT back to topCoding sequence (CDS) from alignment at A01_BnaDARv10:4111636..4113260+ >A01p08920.1_BnaDARv10-RA ID=A01p08920.1_BnaDARv10-RA|Name=A01p08920.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=873bp|location=Sequence derived from alignment at A01_BnaDARv10:4111636..4113260+ (Brassica napus)
ATGTCTGAATCCGTAGCAGCAGAGCATGATTACATAGGTTTGTCCATGGA
AGCATCACAAATGTCTGACAACAAAACCAAAACCAGAGACAACAACAACA
ACAAAAACGACGACGTTCTGAATTTCAAAGCAACCGAGTTAAGACTCGGT
TTACCCGGTTCTGAGTCACCGGAGCGAGTTGACCAGCGGTTCTTGCCTCT
CAAGAGCTCATGTCCAGTGTCAGGTGCCAAAAGGGTGTTTTCCGACGCCA
TTAACGGGTCTACCAAATGGGTCTTCTCTCCTGGATCCGCTACTGATGTC
AAAGACATTAAACCGGCAGTTCCGGTTAAGGAGAAGAAGAGCTCTGCTGC
AGCAGCACCTCCAGCTTCCAAGGCACAAGTTGTGGGTTGGCCACCGATTA
GATCATTCAGGAAGAACACAATGGCTTCTTCTCAATCTCAGAAACAAGGT
GGTGGTGATAATAATAACTCAGAGACTGATGGAGAAGCAAAGTCTGGAGC
TGAGCCTTGCTTGTATGTTAAAGTGAGCATGGAAGGTGCTCCTTACTTGA
GGAAAATCGATCTCAAGACTTACAAGAGCTACGTTGAGCTCTCTTCTGCT
CTTGAGGAGATGTTCAGCTGCTTCACTATTGGTCAGTTTGGGTCTCACGG
AGGGTGTGGCCGAGATGGGTTAAACGAGAGTCGCTTGACCGATCTCTTGC
GTGGTTCTGAGTATGTTGTTACCTATGAAGACAAAGACAGTGACTGGATG
TTGGTTGGTGATGTCCCTTGGGAAATGTTTATATGCTCCTGCAAGAAGCT
GAGGATCATGAAGAGCTCTGAGGCTATAGGCTTAGCTCCAAGGGTGATGG
AGAAATGCAGAAGCCGGAACTAG back to top
|