Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1066 |
| Exons | 3 |
| Cds size | 312 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p08910.1_BnaDARv10 | A01p08910.1_BnaDARv10 | Brassica napus | gene | A01_BnaDARv10 4097431..4099515 - |
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340527.4549012-five_prime_UTR-A01_BnaDARv10:4097430..4098184 | 1626340527.4549012-five_prime_UTR-A01_BnaDARv10:4097430..4098184 | Brassica napus | five_prime_UTR | A01_BnaDARv10 4097431..4098184 - |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p08910.1_BnaDARv10_exon1 | A01p08910.1_BnaDARv10_exon1 | Brassica napus | exon | A01_BnaDARv10 4097431..4098357 - |
| A01p08910.1_BnaDARv10_exon2 | A01p08910.1_BnaDARv10_exon2 | Brassica napus | exon | A01_BnaDARv10 4098492..4098591 - |
| A01p08910.1_BnaDARv10_exon3 | A01p08910.1_BnaDARv10_exon3 | Brassica napus | exon | A01_BnaDARv10 4099477..4099515 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340527.462103-CDS-A01_BnaDARv10:4098184..4098357 | 1626340527.462103-CDS-A01_BnaDARv10:4098184..4098357 | Brassica napus | CDS | A01_BnaDARv10 4098185..4098357 - |
| 1626340527.4695475-CDS-A01_BnaDARv10:4098491..4098591 | 1626340527.4695475-CDS-A01_BnaDARv10:4098491..4098591 | Brassica napus | CDS | A01_BnaDARv10 4098492..4098591 - |
| 1626340527.4797828-CDS-A01_BnaDARv10:4099476..4099515 | 1626340527.4797828-CDS-A01_BnaDARv10:4099476..4099515 | Brassica napus | CDS | A01_BnaDARv10 4099477..4099515 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >A01p08910.1_BnaDARv10-RA ID=A01p08910.1_BnaDARv10-RA|Name=A01p08910.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1066bp|location=Sequence derived from alignment at A01_BnaDARv10:4097431..4099515- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTATGAAATCGGCTTATATCTCCAGCAAGTCTCCGTGTTGCTCTGG
TTTTAAAGCTTTCTGTTTGTACAAGTTTGAGTCAAAACTCATACAAGTTA
TATATGACTTTTCCTGGAACACCCACCACATTTCTACAGGTTTGGCAACA
GTGGAGAGGGATCCTTCGTGTCAGCCCATTACAAAGACGGAATTTGATAT
CGAGAGAAGAAAAGTTACTAAAGAGGCTATCATGGAGTTAATATCTAGGG
AGATAACTGAGTACCATACTCAGCTGCTAATGAATTCAAGTTTTATCTAT
CAAAAGTCTTAATATAATACTTGTGTTTGCATCTCTGAGAAAGCATTGTG
TTACACCCAATCGCTAACATTGTCAGTGTTGTGCATTGTTGTTAATCAAT
TTAGGAGACAGTTGCGCATCTTGAAGAAAATAGCGGAAAAAAACAGGCCC
TGTGGCACCCCTAGAAAAGAAACATGCCTCTTCCCAGGTAAATCCGTATA
TTATTTTTTCTTTTAGTGATTGTTTGTTTTCACATGATCTTATTTCTTTT
ATCTCCTCTCTTACTGACCGGGTAATATGCATTGTTAGCTTAGTTGTATA
TGTACATTTACATAATCAGAGCCTCATCTACAACCAGCTTGTGTTGAACA
CTAATTTCTTTGAGCCTCATGTCAGCTTAATTTATATTATGTATTTTTAT
ATTTGGAACTGAAAAAATGTATATTTGCATTTGTTTTGCTCTATGGACAT
TGGACTGTACGAGGATCAACTCCAAATTGCATAAGTTATTGCTTGGTCGG
GCGGATAACCTTTTGGCTTCTTCTTTGTAAATAATATGTATGGAGCAAGA
AAGGGTTGGTGTTGATTCCGTCAGTCATCTTGAAATCAGCTGGAGACTGA
CCTGCGGCAATGTTAATTCTCTTGAAAACCCAATGTTGATGTCTAGGCGT
TAGCTCTTTAAATATAAAAGACTTTGCAGTTCATAATCTGTAACTTTATA
TCATAGAGATTTGTCACGTACATTCTGAAAATTGGTACTGTAAGATAAGA
AACGAACTCATTGCTA back to topprotein sequence of A01p08910.1_BnaDARv10-RA >A01p08910.1_BnaDARv10-PA ID=A01p08910.1_BnaDARv10-PA|Name=A01p08910.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=104bp
MAMKSAYISSKSPCCSGFKAFCLYKFESKLIQVIYDFSWNTHHISTGLAT
VERDPSCQPITKTEFDIERRKVTKEAIMELISREITEYHTQLLMNSSFIY
QKS. back to topmRNA from alignment at A01_BnaDARv10:4097431..4099515- Legend: polypeptideCDSexonfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >A01p08910.1_BnaDARv10-RA ID=A01p08910.1_BnaDARv10-RA|Name=A01p08910.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2085bp|location=Sequence derived from alignment at A01_BnaDARv10:4097431..4099515- (Brassica napus)
ATGGCTATGAAATCGGCTTATATCTCCAGCAAGTCTCCGGTATGAATGTT
TCTTTCCCAATTTTGTTTCATGGATTATAGAAAATCTCATTAACCACTCA
CTGGTTTCTTTTCCAGCAGGACACTGTGATGCAAGGTCTCATCTAATTGT
GCTCCACTCTACCTCCCTGACCTCAAACTAGGATTCACTTATAGTTCAGG
AACTTTTTTTGCTATGAAAAGCAAAGAGATCTATCGAGTTGCTGATCTTG
GTTTGGCCATTTGCTTCACGCACAGCTCTGTCCTCTCCGATCTTGACCAC
ATGTGCCTCCCTATTGACGCAGACAGGTTTAGGTTTAACTTACATGAGGT
TTTGAAGCCAACTATGGACTCAGGGTGACCTCTATTGTAAGCTGTTACAA
CTTTAAAGTCATATTCAATTTGATTGCTTATCTGCGTAGTTATAGACATT
TGAAGGCCCCATTTAACTGCAACTTCCCAACCATTGATGTAGATGTCGTT
GGCCACATGAAACTGCTAAATGAACAGATGCTCATTCAACGCCCGGTCCT
TCACGAAGTGGCAATAGCAACCACACAGTGTGTCTTGATCCATTTGCAAA
CTAAGTAGTATATTGTCTTCAACTATTGCACATTCTCTGTATAGAATAGT
AAAGTTTATAGCTATGAGTATGACATATATTTGACGTTCTAATCATGGTT
ACTTTCCATACTCATGGTTCTGTTTATATTTGTATGGTTAGTAATCTGTA
TAGAATAGTTAAGTTTCTAGAATCGGTACTTTGACGTTCGGCTCCCGTAT
GTTTACTGACTCTTCAATTTCTACATAAATATCTCAATATAATTTAGGCC
CACTTATCTTTCTCTTTTTTTTTTTTGTGTTTGATCTTCTACTAAGGTTC
TTTGTTTTATTTTTTTACTTTCAGTGTTGCTCTGGTTTTAAAGCTTTCTG
TTTGTACAAGTTTGAGTCAAAACTCATACAAGTTATATATGACTTTTCCT
GGAACACCCACCACATTTCTACAGGTAAAATTGTGTTGATTACTTTGCAA
GTTTATCATATAAGTTTTTTTTTTTTTCGAAATTCCAGCTCTGACTATAC
AATGTGCATTTCCAATTGAAGCGTTCATTAGGCCCTTTTTTTGATCCATA
ATTAAAAGGTTTGGCAACAGTGGAGAGGGATCCTTCGTGTCAGCCCATTA
CAAAGACGGAATTTGATATCGAGAGAAGAAAAGTTACTAAAGAGGCTATC
ATGGAGTTAATATCTAGGGAGATAACTGAGTACCATACTCAGCTGCTAAT
GAATTCAAGTTTTATCTATCAAAAGTCTTAATATAATACTTGTGTTTGCA
TCTCTGAGAAAGCATTGTGTTACACCCAATCGCTAACATTGTCAGTGTTG
TGCATTGTTGTTAATCAATTTAGGAGACAGTTGCGCATCTTGAAGAAAAT
AGCGGAAAAAAACAGGCCCTGTGGCACCCCTAGAAAAGAAACATGCCTCT
TCCCAGGTAAATCCGTATATTATTTTTTCTTTTAGTGATTGTTTGTTTTC
ACATGATCTTATTTCTTTTATCTCCTCTCTTACTGACCGGGTAATATGCA
TTGTTAGCTTAGTTGTATATGTACATTTACATAATCAGAGCCTCATCTAC
AACCAGCTTGTGTTGAACACTAATTTCTTTGAGCCTCATGTCAGCTTAAT
TTATATTATGTATTTTTATATTTGGAACTGAAAAAATGTATATTTGCATT
TGTTTTGCTCTATGGACATTGGACTGTACGAGGATCAACTCCAAATTGCA
TAAGTTATTGCTTGGTCGGGCGGATAACCTTTTGGCTTCTTCTTTGTAAA
TAATATGTATGGAGCAAGAAAGGGTTGGTGTTGATTCCGTCAGTCATCTT
GAAATCAGCTGGAGACTGACCTGCGGCAATGTTAATTCTCTTGAAAACCC
AATGTTGATGTCTAGGCGTTAGCTCTTTAAATATAAAAGACTTTGCAGTT
CATAATCTGTAACTTTATATCATAGAGATTTGTCACGTACATTCTGAAAA
TTGGTACTGTAAGATAAGAAACGAACTCATTGCTA back to topCoding sequence (CDS) from alignment at A01_BnaDARv10:4097431..4099515- >A01p08910.1_BnaDARv10-RA ID=A01p08910.1_BnaDARv10-RA|Name=A01p08910.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=312bp|location=Sequence derived from alignment at A01_BnaDARv10:4097431..4099515- (Brassica napus)
ATGGCTATGAAATCGGCTTATATCTCCAGCAAGTCTCCGTGTTGCTCTGG
TTTTAAAGCTTTCTGTTTGTACAAGTTTGAGTCAAAACTCATACAAGTTA
TATATGACTTTTCCTGGAACACCCACCACATTTCTACAGGTTTGGCAACA
GTGGAGAGGGATCCTTCGTGTCAGCCCATTACAAAGACGGAATTTGATAT
CGAGAGAAGAAAAGTTACTAAAGAGGCTATCATGGAGTTAATATCTAGGG
AGATAACTGAGTACCATACTCAGCTGCTAATGAATTCAAGTTTTATCTAT
CAAAAGTCTTAA back to top
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