A01p08530.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	A01p08530.1_BnaDARv10-RA
Unique Name	A01p08530.1_BnaDARv10-RA
Type	mRNA
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
A01p08530.1_BnaDARv10	A01p08530.1_BnaDARv10	Brassica napus	gene	A01_BnaDARv10 3871410..3873488 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p08530.1_BnaDARv10-RA	A01p08530.1_BnaDARv10-PA	Brassica napus	polypeptide	A01_BnaDARv10 3871552..3873488 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340523.6295228-five_prime_UTR-A01_BnaDARv10:3871409..3871551	1626340523.6295228-five_prime_UTR-A01_BnaDARv10:3871409..3871551	Brassica napus	five_prime_UTR	A01_BnaDARv10 3871410..3871551 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p08530.1_BnaDARv10_exon1	A01p08530.1_BnaDARv10_exon1	Brassica napus	exon	A01_BnaDARv10 3871410..3871757 -
A01p08530.1_BnaDARv10_exon2	A01p08530.1_BnaDARv10_exon2	Brassica napus	exon	A01_BnaDARv10 3871865..3872015 -
A01p08530.1_BnaDARv10_exon3	A01p08530.1_BnaDARv10_exon3	Brassica napus	exon	A01_BnaDARv10 3872099..3872214 -
A01p08530.1_BnaDARv10_exon4	A01p08530.1_BnaDARv10_exon4	Brassica napus	exon	A01_BnaDARv10 3872302..3872389 -
A01p08530.1_BnaDARv10_exon5	A01p08530.1_BnaDARv10_exon5	Brassica napus	exon	A01_BnaDARv10 3872484..3872626 -
A01p08530.1_BnaDARv10_exon6	A01p08530.1_BnaDARv10_exon6	Brassica napus	exon	A01_BnaDARv10 3872699..3872762 -
A01p08530.1_BnaDARv10_exon7	A01p08530.1_BnaDARv10_exon7	Brassica napus	exon	A01_BnaDARv10 3872846..3873001 -
A01p08530.1_BnaDARv10_exon8	A01p08530.1_BnaDARv10_exon8	Brassica napus	exon	A01_BnaDARv10 3873219..3873488 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340523.6375444-CDS-A01_BnaDARv10:3871551..3871757	1626340523.6375444-CDS-A01_BnaDARv10:3871551..3871757	Brassica napus	CDS	A01_BnaDARv10 3871552..3871757 -
1626340523.6437306-CDS-A01_BnaDARv10:3871864..3872015	1626340523.6437306-CDS-A01_BnaDARv10:3871864..3872015	Brassica napus	CDS	A01_BnaDARv10 3871865..3872015 -
1626340523.6498234-CDS-A01_BnaDARv10:3872098..3872214	1626340523.6498234-CDS-A01_BnaDARv10:3872098..3872214	Brassica napus	CDS	A01_BnaDARv10 3872099..3872214 -
1626340523.6558702-CDS-A01_BnaDARv10:3872301..3872389	1626340523.6558702-CDS-A01_BnaDARv10:3872301..3872389	Brassica napus	CDS	A01_BnaDARv10 3872302..3872389 -
1626340523.6626287-CDS-A01_BnaDARv10:3872483..3872626	1626340523.6626287-CDS-A01_BnaDARv10:3872483..3872626	Brassica napus	CDS	A01_BnaDARv10 3872484..3872626 -
1626340523.6686597-CDS-A01_BnaDARv10:3872698..3872762	1626340523.6686597-CDS-A01_BnaDARv10:3872698..3872762	Brassica napus	CDS	A01_BnaDARv10 3872699..3872762 -
1626340523.6748908-CDS-A01_BnaDARv10:3872845..3873001	1626340523.6748908-CDS-A01_BnaDARv10:3872845..3873001	Brassica napus	CDS	A01_BnaDARv10 3872846..3873001 -
1626340523.6809528-CDS-A01_BnaDARv10:3873218..3873488	1626340523.6809528-CDS-A01_BnaDARv10:3873218..3873488	Brassica napus	CDS	A01_BnaDARv10 3873219..3873488 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at A01_BnaDARv10:3871410..3873488-
coding sequence from alignment at A01_BnaDARv10:3871410..3873488-

spliced messenger RNA

>A01p08530.1_BnaDARv10-RA ID=A01p08530.1_BnaDARv10-RA|Name=A01p08530.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1336bp|location=Sequence derived from alignment at A01_BnaDARv10:3871410..3873488- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAAGAAGAATAACAACAACAACAACGAGGAAGAAGAGTTCGTCAG
CTTCGGACACAACCTGAACACGAAGATACGCTTCGAAGATGCTGATGAAG
ACGAAGTTGCAGAAGGCTCCGGTTTTGAAGCCGCTCAAGACGAATCAATG
TGCGAAGCCGGAGAGAGCACCGATGCAGCTCAAGTCACTGATGATACCAC
CAGCGCCGATTACTACTTCGATTCCTACTCTCACTTCGGTAAAATCCCCT
TTTGTTTTATTTTCAGTAAAGAGATGTTGAAGGATGTAGTGAGAACAAAG
ACTTATCAGAACGTAATTTACCAAAACAAGTTTCTCATCAAGGACAAGAT
TGTTCTTGATGTTGGAGCTGGGACAGGGATCTTGTCTCTCTTCTGTGCCA
AGGCTGGAGCTAAACATGTCTACGCTGTTGAATGTTCTCAAATGGCTGAC
ATGGCAAAGGAGATTGTTAAAGCCAATGGATTTTCTGATGTTATAACGGT
TTTGAAAGGGAAGATTGAAGAGATAGAGCTTCCCACTCCTAAAGTGGATG
TGATTATATCTGAATGGATGGGTTACTTTTTGTTGTTTGAAAACATGTTG
GACAGTGTCCTATACGCGCGCAACAAATGGCTTGTTGATGGTGGAATTGT
GCTACCAGACAAAGCCTCTCTCTTTCTTACAGCAATTGAGGATTCAGAGT
ACAAAGAAGACAAAATTGAATTTTGGAACAGTGTGTATGGTTTTGACATG
TCATGCATCAAGAAAAAAGCTATGATGGAACCGCTTGTCGACACAGTCGA
CCAAAACCAGATTGTCACCGATAGTAAGCTACTTAAGACAATGGATATCT
CGAAGATGTCTTCTGGTGATGCTTCCTTCACAGCTCCCTTTAAACTTGTT
GCGCAACGCAATGACTACATCCACGCTCTTGTAGCCTACTTTGATGTATC
GTTTACCATGTGCCACAAGCTGCTTGGTTTCTCAACAGGACCGAGATCCC
GAGCTACGCACTGGAAACAAACAGTCATGTACCTTGAAGATGTGTTAACA
ATATGTGAGGGTGAGACAATTACTGGAAGCATGTCTGTTTCGTACAACAA
GAAGAATCCTAGAGACGTTGACATCAAGCTAAGCTATTCTTTGAATGGCC
AGCACTCCAAGGTCTCAAGGACTCAACACTACAAAATGCGCTGAAGTTCA
AAACTTCAAATTTGCAGCTGAAACTGAGAAGATAACAATTCTCAAATTGT
GATTTTAGTTTTTGTATTCCTTTTCAGTTTTGCAACATTCCATTTACCAC
TGCAACATTTGTTTGAATTCATGATTTTGCTCTAAG

protein sequence of A01p08530.1_BnaDARv10-RA

>A01p08530.1_BnaDARv10-PA ID=A01p08530.1_BnaDARv10-PA|Name=A01p08530.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=398bp
MTKKNNNNNNEEEEFVSFGHNLNTKIRFEDADEDEVAEGSGFEAAQDESM
CEAGESTDAAQVTDDTTSADYYFDSYSHFGKIPFCFIFSKEMLKDVVRTK
TYQNVIYQNKFLIKDKIVLDVGAGTGILSLFCAKAGAKHVYAVECSQMAD
MAKEIVKANGFSDVITVLKGKIEEIELPTPKVDVIISEWMGYFLLFENML
DSVLYARNKWLVDGGIVLPDKASLFLTAIEDSEYKEDKIEFWNSVYGFDM
SCIKKKAMMEPLVDTVDQNQIVTDSKLLKTMDISKMSSGDASFTAPFKLV
AQRNDYIHALVAYFDVSFTMCHKLLGFSTGPRSRATHWKQTVMYLEDVLT
ICEGETITGSMSVSYNKKNPRDVDIKLSYSLNGQHSKVSRTQHYKMR.

mRNA from alignment at A01_BnaDARv10:3871410..3873488-

Legend: polypeptideCDSexonfive_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>A01p08530.1_BnaDARv10-RA ID=A01p08530.1_BnaDARv10-RA|Name=A01p08530.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2079bp|location=Sequence derived from alignment at A01_BnaDARv10:3871410..3873488- (Brassica napus)
ATGACTAAGAAGAATAACAACAACAACAACGAGGAAGAAGAGTTCGTCAG
CTTCGGACACAACCTGAACACGAAGATACGCTTCGAAGATGCTGATGAAG
ACGAAGTTGCAGAAGGCTCCGGTTTTGAAGCCGCTCAAGACGAATCAATG
TGCGAAGCCGGAGAGAGCACCGATGCAGCTCAAGTCACTGATGATACCAC
CAGCGCCGATTACTACTTCGATTCCTACTCTCACTTCGGTAAAATCCCCT
TTTGTTTTATTTTCAGTAAAGTTCTATTCTTTATTGAGTTAGAGTGGTAA
TAAATGTTGACTCTGATTCTACTTTATCTGTTTTGCAGGAATTCATGAAG
TAAGTATCGAAAAGCCATACTCTTTCCGGTGTTATTACCAGATGTGTTTA
TTACCAGACGAACTAGTTCAATATAATCAGTTCAATTATGAGTCTTTTGT
ATCTATGGATGACTGATTCGGGGATGGTATATTGCAGGAGATGTTGAAGG
ATGTAGTGAGAACAAAGACTTATCAGAACGTAATTTACCAAAACAAGTTT
CTCATCAAGGACAAGATTGTTCTTGATGTTGGAGCTGGGACAGGGATCTT
GTCTCTCTTCTGTGCCAAGGCTGGAGCTAAACATGTCTACGCTGTACGTC
TTTAATCTCTTTCAGTCTCTTTTTTTCTTTGAAAGTGAGAATCTCATTCA
ATCTGATTGAGGATGTTCTTTTATAGGTTGAATGTTCTCAAATGGCTGAC
ATGGCAAAGGAGATTGTTAAAGCCAATGGATTTTCTGATGGTAGTTGAAT
TTTTGAGTTGATTTTGAACTCTGCTTTGTAGCCGCTTGATGATTATTGTT
TTATTGATGCAGTTATAACGGTTTTGAAAGGGAAGATTGAAGAGATAGAG
CTTCCCACTCCTAAAGTGGATGTGATTATATCTGAATGGATGGGTTACTT
TTTGTTGTTTGAAAACATGTTGGACAGTGTCCTATACGCGCGCAACAAAT
GGCTTGTAAGTTTCAGCTCCACTTTGTTTGTTATAGTAGACCGATTAAAC
CCTATGGTTGCATGTCCCTTATTATATGGTCCTTTGTCTTCACTGATAGG
TTGATGGTGGAATTGTGCTACCAGACAAAGCCTCTCTCTTTCTTACAGCA
ATTGAGGATTCAGAGTACAAAGAAGACAAAATTGAATGTGAGCGCATTGA
TTCTGTTCCAACATTGATCTCAATGTCTGTTGAAAATGCGATTGCTAATT
GCGTTTTGTGTTTTTCTACTGCAGTTTGGAACAGTGTGTATGGTTTTGAC
ATGTCATGCATCAAGAAAAAAGCTATGATGGAACCGCTTGTCGACACAGT
CGACCAAAACCAGATTGTCACCGATAGTAAGCTACTTAAGGTAAGATACT
ACTACACGTCGATAGTATCTATTTTACATGTGTGGCTAATGCTTAAATCA
TTTTATTTTTGGTTTTGTAACAGACAATGGATATCTCGAAGATGTCTTCT
GGTGATGCTTCCTTCACAGCTCCCTTTAAACTTGTTGCGCAACGCAATGA
CTACATCCACGCTCTTGTAGCCTACTTTGATGTATCGTTTACCATGTGCC
ACAAGCTGCTTGGTTTCTCAACAGGTTCAGATCTTTTTCTGCAATTTCTT
TCTACTTCTGAGTTGTTCTTAATGTTATTGAATCATTATGGTCTGAAACG
TACACTGAACAACCACTGGTTTGAAATGCAGGACCGAGATCCCGAGCTAC
GCACTGGAAACAAACAGTCATGTACCTTGAAGATGTGTTAACAATATGTG
AGGGTGAGACAATTACTGGAAGCATGTCTGTTTCGTACAACAAGAAGAAT
CCTAGAGACGTTGACATCAAGCTAAGCTATTCTTTGAATGGCCAGCACTC
CAAGGTCTCAAGGACTCAACACTACAAAATGCGCTGAAGTTCAAAACTTC
AAATTTGCAGCTGAAACTGAGAAGATAACAATTCTCAAATTGTGATTTTA
GTTTTTGTATTCCTTTTCAGTTTTGCAACATTCCATTTACCACTGCAACA
TTTGTTTGAATTCATGATTTTGCTCTAAG

Coding sequence (CDS) from alignment at A01_BnaDARv10:3871410..3873488-

>A01p08530.1_BnaDARv10-RA ID=A01p08530.1_BnaDARv10-RA|Name=A01p08530.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1194bp|location=Sequence derived from alignment at A01_BnaDARv10:3871410..3873488- (Brassica napus)
ATGACTAAGAAGAATAACAACAACAACAACGAGGAAGAAGAGTTCGTCAG
CTTCGGACACAACCTGAACACGAAGATACGCTTCGAAGATGCTGATGAAG
ACGAAGTTGCAGAAGGCTCCGGTTTTGAAGCCGCTCAAGACGAATCAATG
TGCGAAGCCGGAGAGAGCACCGATGCAGCTCAAGTCACTGATGATACCAC
CAGCGCCGATTACTACTTCGATTCCTACTCTCACTTCGGTAAAATCCCCT
TTTGTTTTATTTTCAGTAAAGAGATGTTGAAGGATGTAGTGAGAACAAAG
ACTTATCAGAACGTAATTTACCAAAACAAGTTTCTCATCAAGGACAAGAT
TGTTCTTGATGTTGGAGCTGGGACAGGGATCTTGTCTCTCTTCTGTGCCA
AGGCTGGAGCTAAACATGTCTACGCTGTTGAATGTTCTCAAATGGCTGAC
ATGGCAAAGGAGATTGTTAAAGCCAATGGATTTTCTGATGTTATAACGGT
TTTGAAAGGGAAGATTGAAGAGATAGAGCTTCCCACTCCTAAAGTGGATG
TGATTATATCTGAATGGATGGGTTACTTTTTGTTGTTTGAAAACATGTTG
GACAGTGTCCTATACGCGCGCAACAAATGGCTTGTTGATGGTGGAATTGT
GCTACCAGACAAAGCCTCTCTCTTTCTTACAGCAATTGAGGATTCAGAGT
ACAAAGAAGACAAAATTGAATTTTGGAACAGTGTGTATGGTTTTGACATG
TCATGCATCAAGAAAAAAGCTATGATGGAACCGCTTGTCGACACAGTCGA
CCAAAACCAGATTGTCACCGATAGTAAGCTACTTAAGACAATGGATATCT
CGAAGATGTCTTCTGGTGATGCTTCCTTCACAGCTCCCTTTAAACTTGTT
GCGCAACGCAATGACTACATCCACGCTCTTGTAGCCTACTTTGATGTATC
GTTTACCATGTGCCACAAGCTGCTTGGTTTCTCAACAGGACCGAGATCCC
GAGCTACGCACTGGAAACAAACAGTCATGTACCTTGAAGATGTGTTAACA
ATATGTGAGGGTGAGACAATTACTGGAAGCATGTCTGTTTCGTACAACAA
GAAGAATCCTAGAGACGTTGACATCAAGCTAAGCTATTCTTTGAATGGCC
AGCACTCCAAGGTCTCAAGGACTCAACACTACAAAATGCGCTGA