A01p07120.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	A01p07120.1_BnaDARv10-RA
Unique Name	A01p07120.1_BnaDARv10-RA
Type	mRNA
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
A01p07120.1_BnaDARv10	A01p07120.1_BnaDARv10	Brassica napus	gene	A01_BnaDARv10 3184232..3187133 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p07120.1_BnaDARv10-RA	A01p07120.1_BnaDARv10-PA	Brassica napus	polypeptide	A01_BnaDARv10 3184232..3187133 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340509.986086-CDS-A01_BnaDARv10:3184231..3184778	1626340509.986086-CDS-A01_BnaDARv10:3184231..3184778	Brassica napus	CDS	A01_BnaDARv10 3184232..3184778 -
1626340509.9927766-CDS-A01_BnaDARv10:3186067..3186353	1626340509.9927766-CDS-A01_BnaDARv10:3186067..3186353	Brassica napus	CDS	A01_BnaDARv10 3186068..3186353 -
1626340509.9986448-CDS-A01_BnaDARv10:3186436..3186587	1626340509.9986448-CDS-A01_BnaDARv10:3186436..3186587	Brassica napus	CDS	A01_BnaDARv10 3186437..3186587 -
1626340510.0044641-CDS-A01_BnaDARv10:3186660..3186925	1626340510.0044641-CDS-A01_BnaDARv10:3186660..3186925	Brassica napus	CDS	A01_BnaDARv10 3186661..3186925 -
1626340510.0104077-CDS-A01_BnaDARv10:3187017..3187133	1626340510.0104077-CDS-A01_BnaDARv10:3187017..3187133	Brassica napus	CDS	A01_BnaDARv10 3187018..3187133 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p07120.1_BnaDARv10_exon1	A01p07120.1_BnaDARv10_exon1	Brassica napus	exon	A01_BnaDARv10 3184232..3184778 -
A01p07120.1_BnaDARv10_exon2	A01p07120.1_BnaDARv10_exon2	Brassica napus	exon	A01_BnaDARv10 3186068..3186353 -
A01p07120.1_BnaDARv10_exon3	A01p07120.1_BnaDARv10_exon3	Brassica napus	exon	A01_BnaDARv10 3186437..3186587 -
A01p07120.1_BnaDARv10_exon4	A01p07120.1_BnaDARv10_exon4	Brassica napus	exon	A01_BnaDARv10 3186661..3186925 -
A01p07120.1_BnaDARv10_exon5	A01p07120.1_BnaDARv10_exon5	Brassica napus	exon	A01_BnaDARv10 3187018..3187133 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at A01_BnaDARv10:3184232..3187133-
coding sequence from alignment at A01_BnaDARv10:3184232..3187133-

spliced messenger RNA

>A01p07120.1_BnaDARv10-RA ID=A01p07120.1_BnaDARv10-RA|Name=A01p07120.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1365bp|location=Sequence derived from alignment at A01_BnaDARv10:3184232..3187133- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCACTTCATCGAGTAGAAACACTACTCTCTGGGCTCCATCATTG
CCCTCGTACGAGCGCCAACAGAAACAGAGTATTCAGATCCGTGAAGGTCT
TCAGCAACCCAAGAAAGTGTCAGTGTTTTGATCTACACGACAAGTTGGTT
CCGTACAATAAAGCTTGGACATGGCAGAAACGCATCGTCGAGGAGAAAAA
GACACTGATTGATAGAAACCAAGACTGTCCTGACACTGTGATTTCATTAC
AACACGATCCTGTTTACACAATGGGGACTGGCAGCTCAGAGGATTATCTC
AATTTCGACGTAAAGGATGCTCCTTTCGATGTGTATCGAACTGAGCGTGG
TGGTGAAGTCACTTACCATGGTCCTGGTCAGCTAGTTATGTATCCTATAA
TCAATCTTCGGAATCACGAGATGGATCTTCATTGGTACCTCAGGACACTT
GAAGAGGTTGTCATTAATGTTCTTTCCTCTGCTTTCTCTATCAAAGCTTC
ACGTGTTGATGGTTTAACTGGAGTTTGGGTTGGTAACCAAAAAGTGGCGG
CTATTGGTATTCGTGTGTCGAAATGGATAACGTACCATGGTCTGGCGCTT
AATGTTACTACTGATTTAACACCGTTTAACTCGATAGTTCCGTGTGGGAT
TAGAGACCGGCAAGTTGGGAGCATAAAGGGTTTGCTTGGAGATGGAGAAC
ATGGAACGGTTGGTGATTTGAGGTTGATAGATATTGCTCATGAGTCTTTG
CTTAAGGAGTTCTCTGAAGTTTTCCAGCTTCAAATCGAAAAGGAGACAGT
TGCAGATCCTTATATTTTGGACATGATGCCACCCTCTACTCCTAAATCTC
CTTTACTAGAAGAAGCTCATGAAGATGGAAGGTTTAAATGCTACAGGGGT
GTAAGAAAGAGGTCGTGGGGCAAGTGGGTGTCTGAAATAAGAGTTCCAAG
GACTGCAAGACGGATATGGCTAGGTTCATATGATGATCCAGAGAAGGCAG
CTCGAGCCTATGATGCTGCTTTGTTCTGCATTAGGGGTGAGAAGGGAGTT
TTCAATTTCCCCACTAGTGAAAAGCCTCAGCTTCCTGAAGGTTCTGTCAG
GCCTCTCTCCAAGCTTGACATTCAGACAATAGCAACCAACTATGCTTCAT
CAGTTGTGTCTGTGCCTTCCACTACCATACCAATCCCGGCAACAGATCAG
GTTTCTGCATCCCCGGATGTAGCTGTTTCTACTGAGATTATGGAGATGGC
TGATGAACATTATCTCCCAGTGGATGCAAGTGTAGAATCAATATTCTCAG
TAGAAGACTTGCAGCTGGACAATTTCCTTATGATGGACATTGACTGGATA
GACGATCTAGTCTGA

protein sequence of A01p07120.1_BnaDARv10-RA

>A01p07120.1_BnaDARv10-PA ID=A01p07120.1_BnaDARv10-PA|Name=A01p07120.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=455bp
MESLHRVETLLSGLHHCPRTSANRNRVFRSVKVFSNPRKCQCFDLHDKLV
PYNKAWTWQKRIVEEKKTLIDRNQDCPDTVISLQHDPVYTMGTGSSEDYL
NFDVKDAPFDVYRTERGGEVTYHGPGQLVMYPIINLRNHEMDLHWYLRTL
EEVVINVLSSAFSIKASRVDGLTGVWVGNQKVAAIGIRVSKWITYHGLAL
NVTTDLTPFNSIVPCGIRDRQVGSIKGLLGDGEHGTVGDLRLIDIAHESL
LKEFSEVFQLQIEKETVADPYILDMMPPSTPKSPLLEEAHEDGRFKCYRG
VRKRSWGKWVSEIRVPRTARRIWLGSYDDPEKAARAYDAALFCIRGEKGV
FNFPTSEKPQLPEGSVRPLSKLDIQTIATNYASSVVSVPSTTIPIPATDQ
VSASPDVAVSTEIMEMADEHYLPVDASVESIFSVEDLQLDNFLMMDIDWI
DDLV.

mRNA from alignment at A01_BnaDARv10:3184232..3187133-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>A01p07120.1_BnaDARv10-RA ID=A01p07120.1_BnaDARv10-RA|Name=A01p07120.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2902bp|location=Sequence derived from alignment at A01_BnaDARv10:3184232..3187133- (Brassica napus)
ATGGAGTCACTTCATCGAGTAGAAACACTACTCTCTGGGCTCCATCATTG
CCCTCGTACGAGCGCCAACAGAAACAGAGTATTCAGATCCGTGAAGGTCT
TCAGCAACCCAAGAAAGTAAAGTCTCGATATTTTTTTCTTTGAGGCATTT
TCACGAACACCTTAAGTGCAATCACCATCAATTTTATAAAAACCCTTTTT
TCTGTCAGGTGTCAGTGTTTTGATCTACACGACAAGTTGGTTCCGTACAA
TAAAGCTTGGACATGGCAGAAACGCATCGTCGAGGAGAAAAAGACACTGA
TTGATAGAAACCAAGACTGTCCTGACACTGTGATTTCATTACAACACGAT
CCTGTTTACACAATGGGGACTGGCAGCTCAGAGGATTATCTCAATTTCGA
CGTAAAGGATGCTCCTTTCGATGTGTATCGAACTGAGCGTGGTGGTGAAG
TCACTTACCATGGTCCTGGTCAGGTAACTAATGTCAAGTTTCTTTGTTGT
CCTATGAGTTCTTCAAGCTAATGAATGTGATTGTTGAACAATGTAGCTAG
TTATGTATCCTATAATCAATCTTCGGAATCACGAGATGGATCTTCATTGG
TACCTCAGGACACTTGAAGAGGTTGTCATTAATGTTCTTTCCTCTGCTTT
CTCTATCAAAGCTTCACGTGTTGATGGTTTAACTGGAGTTTGGGTTGGTA
TGTCTTGAAACACGCAACATTGTCTTTTAGACTGTTGTTTTGTATTTTGA
TCTTGTTTTTGGTTTGCTAATGTTGTGTAGGTAACCAAAAAGTGGCGGCT
ATTGGTATTCGTGTGTCGAAATGGATAACGTACCATGGTCTGGCGCTTAA
TGTTACTACTGATTTAACACCGTTTAACTCGATAGTTCCGTGTGGGATTA
GAGACCGGCAAGTTGGGAGCATAAAGGGTTTGCTTGGAGATGGAGAACAT
GGAACGGTTGGTGATTTGAGGTTGATAGATATTGCTCATGAGTCTTTGCT
TAAGGAGTTCTCTGAAGTTTTCCAGCTTCAAATCGAAAAGGAGACAGTTG
CAGATCCTTATATTTTGTAAGCTGAGCCTTTCAAACGTTTGGAGTGAGAA
AAGTCTTGCAATCTCTGTAACAATGTTGTAACGTTTTTAACATAAAGATC
TTATCCACAGAAAAAGGTTTATTGGCAATTTGTGACATTGTCTGATTTTT
GTAGCTTTTTGTATGAGATTGGTCTCTCTCTACTTCTCTTTTGCATTGTT
ATGATTTGTGAGATGGCTTGAAAAGAAGTGTTTGGATGCAGGACTCATGA
AATCCTAGGCAATAAAATGACTGATAGAAACTCAGATACATCATACATGG
AAGATGGCAGTAGTTTAGAAAAGATAGTTAAAAAAAAACTAATTACAAAC
CAAGTTTGGTGAATTAAAAGGATAACCACAATATCCAGAAGCCAGAGATT
TTGGTGAAGGGTCACTTGCTCAGCAGAGATATTTTCATTACTAGTTGATA
TTTCTTTTATGCATATCTGTCTTTTTGCAGCTTGCAGTTTGCTGATGGAG
ATCAGTGTGCTATGTATGACGATCAACTATCATCAACGGTCTCATTGTGG
AGCAATCCAGGTAATAGTAGAAGATTCTCCAACTGAACTACAACATTAAA
CTTTAGTGCCTTGAGTAATGAAGTACATAATAGCACAGTAAAGATTATAA
GATCCTAGTTAATGTTTCCAACCTTAGAAGATTTGCAGGCAATCTTACCT
TTTTTCTTGGCTCTTTCCCATTTTACAGTTTGAATAGTTCTTTCCGTTTC
AAGGTTGTTAGGCTTGATTCCTCAGATCACATGAATACAAGAAGTGTAGC
TCAGTTTCCAGGACTATCTTCCACTTAAGGTATCTTTTTAACGCTCACTG
GACTTGGATCAAAAGATGTCAGTCTACATTAATGCTTTTACAGATTATCT
GGCTGACACATGGAATAAAACTGAAACTCTTATCTAGCCTTTGGACTGAT
CTCATAATATCTCCAGAAATTGTGGTGGTTCTTACTCGTGTCTCAACTTC
AGGAAAGAAACGGACATCTGACTTGTAACAAACCAGTAGGTTCTTCCCCT
CCTACTTTCTTTTTTGCGGTGTCTCTCTTTAAAAAAACGTATGCTTGACA
GATATCTTGTCAGTCGATACCTCGAGGTCTCTGCTATCCTGGCACAACAG
CAGCTTCTTCGATGCCACGTGCTGTTGACAAACATGGCGTGCCTCTTCAC
TCCATCTCCACCTGCTCCATAGTTCAACACAAATGTTCTTTCTGCCTTTC
ATACTTGTGCATAAAGCTGTTTACACACTATTCTTAAGAAATCTGCTTCT
GTTAGGGACATGATGCCACCCTCTACTCCTAAATCTCCTTTACTAGAAGA
AGCTCATGAAGATGGAAGGTTTAAATGCTACAGGGGTGTAAGAAAGAGGT
CGTGGGGCAAGTGGGTGTCTGAAATAAGAGTTCCAAGGACTGCAAGACGG
ATATGGCTAGGTTCATATGATGATCCAGAGAAGGCAGCTCGAGCCTATGA
TGCTGCTTTGTTCTGCATTAGGGGTGAGAAGGGAGTTTTCAATTTCCCCA
CTAGTGAAAAGCCTCAGCTTCCTGAAGGTTCTGTCAGGCCTCTCTCCAAG
CTTGACATTCAGACAATAGCAACCAACTATGCTTCATCAGTTGTGTCTGT
GCCTTCCACTACCATACCAATCCCGGCAACAGATCAGGTTTCTGCATCCC
CGGATGTAGCTGTTTCTACTGAGATTATGGAGATGGCTGATGAACATTAT
CTCCCAGTGGATGCAAGTGTAGAATCAATATTCTCAGTAGAAGACTTGCA
GCTGGACAATTTCCTTATGATGGACATTGACTGGATAGACGATCTAGTCT
GA

Coding sequence (CDS) from alignment at A01_BnaDARv10:3184232..3187133-

>A01p07120.1_BnaDARv10-RA ID=A01p07120.1_BnaDARv10-RA|Name=A01p07120.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1365bp|location=Sequence derived from alignment at A01_BnaDARv10:3184232..3187133- (Brassica napus)
ATGGAGTCACTTCATCGAGTAGAAACACTACTCTCTGGGCTCCATCATTG
CCCTCGTACGAGCGCCAACAGAAACAGAGTATTCAGATCCGTGAAGGTCT
TCAGCAACCCAAGAAAGTGTCAGTGTTTTGATCTACACGACAAGTTGGTT
CCGTACAATAAAGCTTGGACATGGCAGAAACGCATCGTCGAGGAGAAAAA
GACACTGATTGATAGAAACCAAGACTGTCCTGACACTGTGATTTCATTAC
AACACGATCCTGTTTACACAATGGGGACTGGCAGCTCAGAGGATTATCTC
AATTTCGACGTAAAGGATGCTCCTTTCGATGTGTATCGAACTGAGCGTGG
TGGTGAAGTCACTTACCATGGTCCTGGTCAGCTAGTTATGTATCCTATAA
TCAATCTTCGGAATCACGAGATGGATCTTCATTGGTACCTCAGGACACTT
GAAGAGGTTGTCATTAATGTTCTTTCCTCTGCTTTCTCTATCAAAGCTTC
ACGTGTTGATGGTTTAACTGGAGTTTGGGTTGGTAACCAAAAAGTGGCGG
CTATTGGTATTCGTGTGTCGAAATGGATAACGTACCATGGTCTGGCGCTT
AATGTTACTACTGATTTAACACCGTTTAACTCGATAGTTCCGTGTGGGAT
TAGAGACCGGCAAGTTGGGAGCATAAAGGGTTTGCTTGGAGATGGAGAAC
ATGGAACGGTTGGTGATTTGAGGTTGATAGATATTGCTCATGAGTCTTTG
CTTAAGGAGTTCTCTGAAGTTTTCCAGCTTCAAATCGAAAAGGAGACAGT
TGCAGATCCTTATATTTTGGACATGATGCCACCCTCTACTCCTAAATCTC
CTTTACTAGAAGAAGCTCATGAAGATGGAAGGTTTAAATGCTACAGGGGT
GTAAGAAAGAGGTCGTGGGGCAAGTGGGTGTCTGAAATAAGAGTTCCAAG
GACTGCAAGACGGATATGGCTAGGTTCATATGATGATCCAGAGAAGGCAG
CTCGAGCCTATGATGCTGCTTTGTTCTGCATTAGGGGTGAGAAGGGAGTT
TTCAATTTCCCCACTAGTGAAAAGCCTCAGCTTCCTGAAGGTTCTGTCAG
GCCTCTCTCCAAGCTTGACATTCAGACAATAGCAACCAACTATGCTTCAT
CAGTTGTGTCTGTGCCTTCCACTACCATACCAATCCCGGCAACAGATCAG
GTTTCTGCATCCCCGGATGTAGCTGTTTCTACTGAGATTATGGAGATGGC
TGATGAACATTATCTCCCAGTGGATGCAAGTGTAGAATCAATATTCTCAG
TAGAAGACTTGCAGCTGGACAATTTCCTTATGATGGACATTGACTGGATA
GACGATCTAGTCTGA