Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 959 |
| Exons | 4 |
| Cds size | 588 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p07080.1_BnaDARv10 | A01p07080.1_BnaDARv10 | Brassica napus | gene | A01_BnaDARv10 3160898..3162194 + |
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340509.7351499-five_prime_UTR-A01_BnaDARv10:3160897..3161050 | 1626340509.7351499-five_prime_UTR-A01_BnaDARv10:3160897..3161050 | Brassica napus | five_prime_UTR | A01_BnaDARv10 3160898..3161050 + |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p07080.1_BnaDARv10_exon1 | A01p07080.1_BnaDARv10_exon1 | Brassica napus | exon | A01_BnaDARv10 3160898..3161233 + |
| A01p07080.1_BnaDARv10_exon2 | A01p07080.1_BnaDARv10_exon2 | Brassica napus | exon | A01_BnaDARv10 3161392..3161606 + |
| A01p07080.1_BnaDARv10_exon3 | A01p07080.1_BnaDARv10_exon3 | Brassica napus | exon | A01_BnaDARv10 3161708..3162194 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340509.7420104-CDS-A01_BnaDARv10:3161143..3161233 | 1626340509.7420104-CDS-A01_BnaDARv10:3161143..3161233 | Brassica napus | CDS | A01_BnaDARv10 3161144..3161233 + |
| 1626340509.7479079-CDS-A01_BnaDARv10:3161391..3161606 | 1626340509.7479079-CDS-A01_BnaDARv10:3161391..3161606 | Brassica napus | CDS | A01_BnaDARv10 3161392..3161606 + |
| 1626340509.7537942-CDS-A01_BnaDARv10:3161707..3161990 | 1626340509.7537942-CDS-A01_BnaDARv10:3161707..3161990 | Brassica napus | CDS | A01_BnaDARv10 3161708..3161990 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340509.759639-three_prime_UTR-A01_BnaDARv10:3161990..3162194 | 1626340509.759639-three_prime_UTR-A01_BnaDARv10:3161990..3162194 | Brassica napus | three_prime_UTR | A01_BnaDARv10 3161991..3162194 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >A01p07080.1_BnaDARv10-RA ID=A01p07080.1_BnaDARv10-RA|Name=A01p07080.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1038bp|location=Sequence derived from alignment at A01_BnaDARv10:3160898..3162194+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.
GTCAACAAGAATCTTTCTGACACTCGTGAACGCCGAGACTTTTGAGGGAT
CATCCGAATTCTCAGTGCAACTTGACAAGTTATCATCATCATCATCTCCC
AAAATCACAATCAAACCAAACCACATCCTCCAGTCTCCAGATTCGTCGCA
TCGGTAAGTGTCTCCAATTATTCTCCCTGTGTGTTTTTCTGTTTGGGGGA
AAATTGAATTTTATATCTTTGTGATCCGTTAGGAGAGAAGAAAAAGATGG
CGGTAACTATGAAACAGATGTCGTTGATCGTCTCCTTGTTTGGCGTCTTG
TCGTTTATTCTTGGAGTCATCGCTGAGAACAAGAAGCCTGCGTCTGGGAC
TCCAATAAATGGAAAGGGAGTAGTTATCTGCAAATACCCATCTGATCCAA
CTGTTGCCTTGGGTTACCTCTCTGCTGCCTTTCTCCTTGCCTGCACCGTA
GCTGGTTACAAATCCTTGTTCATCTCTTACAAGGGAAGGTCTGTTCCCAA
CTCTGTCTTGTTCAAAAGCACCACCTTCTCTGTCTTCTTCAACATCGCCT
TGATAACATCTGGACTAGCATTGTCTCTGTTGCTATGGCCAACCATTACA
GAGCAACTTCACTTGACCCGTAACGTTCACCGGAACTTAGAGACCAGCTG
CCCCACGGCTAAGACCGGCCTCCTTGGTGGAGGCGCCTTTGTGTCACTGG
ACTCGTGCCTTTTCTGGTTGGTCGCTTTGATGCTCGCTGATAACGCCCGT
GAAGACCATTTTGATGAAGCTGATAGCAGAAACGGCGATGGAAACTCTTC
CTCCAGGGATGTTAATCTCAAGATTGATGCTTGAGTGAATAATCTTCATC
TGCTTACTGGTATTGGAGTGTACTTAAAGTGTTTTTATTCTACTGCTTGT
TTGATTAGGAAAATACAAATAGTTTCTTCTACCTGTTTTTAAATACATAT
GATTTTAAAGATTCTATGAAGCAGCTTAATGCACTGCGATTCTTAAAGTT
GTATATATATGTCTACTCAAGTCAGATTCTTGATCAAA back to topprotein sequence of A01p07080.1_BnaDARv10-RA >A01p07080.1_BnaDARv10-PA ID=A01p07080.1_BnaDARv10-PA|Name=A01p07080.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=196bp
MAVTMKQMSLIVSLFGVLSFILGVIAENKKPASGTPINGKGVVICKYPSD
PTVALGYLSAAFLLACTVAGYKSLFISYKGRSVPNSVLFKSTTFSVFFNI
ALITSGLALSLLLWPTITEQLHLTRNVHRNLETSCPTAKTGLLGGGAFVS
LDSCLFWLVALMLADNAREDHFDEADSRNGDGNSSSRDVNLKIDA. back to topmRNA from alignment at A01_BnaDARv10:3160898..3162194+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >A01p07080.1_BnaDARv10-RA ID=A01p07080.1_BnaDARv10-RA|Name=A01p07080.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1297bp|location=Sequence derived from alignment at A01_BnaDARv10:3160898..3162194+ (Brassica napus)
GTCAACAAGAATCTTTCTGACACTCGTGAACGCCGAGACTTTTGAGGGAT
CATCCGAATTCTCAGTGCAACTTGACAAGTTATCATCATCATCATCTCCC
AAAATCACAATCAAACCAAACCACATCCTCCAGTCTCCAGATTCGTCGCA
TCGGTAAGTGTCTCCAATTATTCTCCCTGTGTGTTTTTCTGTTTGGGGGA
AAATTGAATTTTATATCTTTGTGATCCGTTAGGAGAGAAGAAAAAGATGG
CGGTAACTATGAAACAGATGTCGTTGATCGTCTCCTTGTTTGGCGTCTTG
TCGTTTATTCTTGGAGTCATCGCTGAGAACAAGAAGGTATATAATATCTC
TCAGTCTTCTCCTTTTGATTATTATCCGCCAGTCTTTTCTCAGAAAAAAA
AATTGAATGCTGCTGATTATCGCAAGTTAGATTTGTTCGTATTACATTAG
TCTCATTCCGTAATTGTATTCAGTCTTTTTTTTTTTTTGCTTAGCCTGCG
TCTGGGACTCCAATAAATGGAAAGGGAGTAGTTATCTGCAAATACCCATC
TGATCCAACTGTTGCCTTGGGTTACCTCTCTGCTGCCTTTCTCCTTGCCT
GCACCGTAGCTGGTTACAAATCCTTGTTCATCTCTTACAAGGGAAGGTCT
GTTCCCAACTCTGTCTTGTTCAAAAGCACCACCTTCTCTGTCTTCTTCAA
CATCGCCTTGTAAGCATACTACTCTCCTTTTAAAATCTCAATCTTACTTT
CAGCAGTGCATATTTCATTGGTGTGTGGTTGTATTAACAGAGCTGTTTTT
TGTCTTGTAGGATAACATCTGGACTAGCATTGTCTCTGTTGCTATGGCCA
ACCATTACAGAGCAACTTCACTTGACCCGTAACGTTCACCGGAACTTAGA
GACCAGCTGCCCCACGGCTAAGACCGGCCTCCTTGGTGGAGGCGCCTTTG
TGTCACTGGACTCGTGCCTTTTCTGGTTGGTCGCTTTGATGCTCGCTGAT
AACGCCCGTGAAGACCATTTTGATGAAGCTGATAGCAGAAACGGCGATGG
AAACTCTTCCTCCAGGGATGTTAATCTCAAGATTGATGCTTGAGTGAATA
ATCTTCATCTGCTTACTGGTATTGGAGTGTACTTAAAGTGTTTTTATTCT
ACTGCTTGTTTGATTAGGAAAATACAAATAGTTTCTTCTACCTGTTTTTA
AATACATATGATTTTAAAGATTCTATGAAGCAGCTTAATGCACTGCGATT
CTTAAAGTTGTATATATATGTCTACTCAAGTCAGATTCTTGATCAAA back to topCoding sequence (CDS) from alignment at A01_BnaDARv10:3160898..3162194+ >A01p07080.1_BnaDARv10-RA ID=A01p07080.1_BnaDARv10-RA|Name=A01p07080.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=588bp|location=Sequence derived from alignment at A01_BnaDARv10:3160898..3162194+ (Brassica napus)
ATGGCGGTAACTATGAAACAGATGTCGTTGATCGTCTCCTTGTTTGGCGT
CTTGTCGTTTATTCTTGGAGTCATCGCTGAGAACAAGAAGCCTGCGTCTG
GGACTCCAATAAATGGAAAGGGAGTAGTTATCTGCAAATACCCATCTGAT
CCAACTGTTGCCTTGGGTTACCTCTCTGCTGCCTTTCTCCTTGCCTGCAC
CGTAGCTGGTTACAAATCCTTGTTCATCTCTTACAAGGGAAGGTCTGTTC
CCAACTCTGTCTTGTTCAAAAGCACCACCTTCTCTGTCTTCTTCAACATC
GCCTTGATAACATCTGGACTAGCATTGTCTCTGTTGCTATGGCCAACCAT
TACAGAGCAACTTCACTTGACCCGTAACGTTCACCGGAACTTAGAGACCA
GCTGCCCCACGGCTAAGACCGGCCTCCTTGGTGGAGGCGCCTTTGTGTCA
CTGGACTCGTGCCTTTTCTGGTTGGTCGCTTTGATGCTCGCTGATAACGC
CCGTGAAGACCATTTTGATGAAGCTGATAGCAGAAACGGCGATGGAAACT
CTTCCTCCAGGGATGTTAATCTCAAGATTGATGCTTGA back to top
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