Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1060 |
| Exons | 2 |
| Cds size | 756 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p04830.1_BnaDARv10 | A01p04830.1_BnaDARv10 | Brassica napus | gene | A01_BnaDARv10 2182960..2184114 + |
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340481.6123145-five_prime_UTR-A01_BnaDARv10:2182959..2183125 | 1626340481.6123145-five_prime_UTR-A01_BnaDARv10:2182959..2183125 | Brassica napus | five_prime_UTR | A01_BnaDARv10 2182960..2183125 + |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p04830.1_BnaDARv10_exon1 | A01p04830.1_BnaDARv10_exon1 | Brassica napus | exon | A01_BnaDARv10 2182960..2183285 + |
| A01p04830.1_BnaDARv10_exon2 | A01p04830.1_BnaDARv10_exon2 | Brassica napus | exon | A01_BnaDARv10 2183381..2184114 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340481.6227975-CDS-A01_BnaDARv10:2183125..2183285 | 1626340481.6227975-CDS-A01_BnaDARv10:2183125..2183285 | Brassica napus | CDS | A01_BnaDARv10 2183126..2183285 + |
| 1626340481.6317213-CDS-A01_BnaDARv10:2183380..2183976 | 1626340481.6317213-CDS-A01_BnaDARv10:2183380..2183976 | Brassica napus | CDS | A01_BnaDARv10 2183381..2183976 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340481.6428235-three_prime_UTR-A01_BnaDARv10:2183976..2184114 | 1626340481.6428235-three_prime_UTR-A01_BnaDARv10:2183976..2184114 | Brassica napus | three_prime_UTR | A01_BnaDARv10 2183977..2184114 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >A01p04830.1_BnaDARv10-RA ID=A01p04830.1_BnaDARv10-RA|Name=A01p04830.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1060bp|location=Sequence derived from alignment at A01_BnaDARv10:2182960..2184114+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.
AGAGAAGAGAACCAAGACCAACCCTCTCTTTTATATTCCAATTTATTTTT
CTTTCTTTTGTCTTGTTTTTCACCCTTTTTATCATTTCACCGTAGACTAA
TCCATCATATTCCTCTTTCTTCAACATTTTCTCTGTTTGATGTAGGTGAA
GATAGAGATAGCATCCATGGACATGTCTAGGGGAAGCAACAGTTTTGACA
ATAAGAAAATCAGTTGTCAGAGAGGTCACTGGAGACCTATTGAAGACGAC
CATCTCCGGCAACTCGTGGAACAGTATGGGCCCAAGAACTGGAATTTCAT
TGCTCAACATCTTTGTGGAAGATCAGGGAAAAGTTGTAGATTGAGATGGT
ACAATCAACTTGATCCAAACATCACCAAGAAACCTTTCACTGAGGAAGAA
GAAGAGAGACTTCTCAAAGCTCATCGGATCCAGGGGAACCGTTGGGCCTC
TATAGCAAGGCTATTTCCAGGGAGGACCGATAACGCTGTCAAGAACCATT
TTCATGTCATCATGGCTAGACGCAAACGTGAAAGCTTATCTTCTACGTCT
ACTTCTACGTTCAACCAAAGTTGGCATAATATATTGAGCCCTAGTTCTAG
TCTTACAAGGCTTAATAGATCCTCCCAGTTTGGACTATGGAGGTATCAAA
AGGATACAAGTCGTGGTCACTGGCCTTACACTTTCGTTTCAGCACCAAGA
GATGATCAGTTTGGATCTTCATCGATCTCGAATGTACGCAAAGAAGTTTA
TCCTGAGAGGAGAAAGTTGAAAGAGTTGGTGGATGAACACAATAACGCAT
TTCACACAGCTACACCAGATCAAAACAAGAACTCAGTTGAAGATGGACCA
TCCACGGGAGATGATGGTGGGGAGAAAAATGTTACTTTCATTGATTTTCT
TGGAGTTGGATTAGTTTCTTAAGTTACACTCTCACAACTCAATGATTTTA
AAGGGTATCTATCATTAGGGTTAGGTATCATTTTCAGCCTTTTGCTTCCT
TAAAACCTCATATGGATCTTCTATCAATTACAACTCTCATTTTCCGTCCA
TTTATATCTA back to topprotein sequence of A01p04830.1_BnaDARv10-RA >A01p04830.1_BnaDARv10-PA ID=A01p04830.1_BnaDARv10-PA|Name=A01p04830.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=252bp
MDMSRGSNSFDNKKISCQRGHWRPIEDDHLRQLVEQYGPKNWNFIAQHLC
GRSGKSCRLRWYNQLDPNITKKPFTEEEEERLLKAHRIQGNRWASIARLF
PGRTDNAVKNHFHVIMARRKRESLSSTSTSTFNQSWHNILSPSSSLTRLN
RSSQFGLWRYQKDTSRGHWPYTFVSAPRDDQFGSSSISNVRKEVYPERRK
LKELVDEHNNAFHTATPDQNKNSVEDGPSTGDDGGEKNVTFIDFLGVGLV
S. back to topmRNA from alignment at A01_BnaDARv10:2182960..2184114+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >A01p04830.1_BnaDARv10-RA ID=A01p04830.1_BnaDARv10-RA|Name=A01p04830.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1155bp|location=Sequence derived from alignment at A01_BnaDARv10:2182960..2184114+ (Brassica napus)
AGAGAAGAGAACCAAGACCAACCCTCTCTTTTATATTCCAATTTATTTTT
CTTTCTTTTGTCTTGTTTTTCACCCTTTTTATCATTTCACCGTAGACTAA
TCCATCATATTCCTCTTTCTTCAACATTTTCTCTGTTTGATGTAGGTGAA
GATAGAGATAGCATCCATGGACATGTCTAGGGGAAGCAACAGTTTTGACA
ATAAGAAAATCAGTTGTCAGAGAGGTCACTGGAGACCTATTGAAGACGAC
CATCTCCGGCAACTCGTGGAACAGTATGGGCCCAAGAACTGGAATTTCAT
TGCTCAACATCTTTGTGGAAGATCAGGTAATTAATATTTTCATATATAGC
TTGGTCTTTTTCATATGTTCTATATTGGATCTATGTGTTTTTATCAATAA
TTGAGTAATATGGGTTCATAGGGAAAAGTTGTAGATTGAGATGGTACAAT
CAACTTGATCCAAACATCACCAAGAAACCTTTCACTGAGGAAGAAGAAGA
GAGACTTCTCAAAGCTCATCGGATCCAGGGGAACCGTTGGGCCTCTATAG
CAAGGCTATTTCCAGGGAGGACCGATAACGCTGTCAAGAACCATTTTCAT
GTCATCATGGCTAGACGCAAACGTGAAAGCTTATCTTCTACGTCTACTTC
TACGTTCAACCAAAGTTGGCATAATATATTGAGCCCTAGTTCTAGTCTTA
CAAGGCTTAATAGATCCTCCCAGTTTGGACTATGGAGGTATCAAAAGGAT
ACAAGTCGTGGTCACTGGCCTTACACTTTCGTTTCAGCACCAAGAGATGA
TCAGTTTGGATCTTCATCGATCTCGAATGTACGCAAAGAAGTTTATCCTG
AGAGGAGAAAGTTGAAAGAGTTGGTGGATGAACACAATAACGCATTTCAC
ACAGCTACACCAGATCAAAACAAGAACTCAGTTGAAGATGGACCATCCAC
GGGAGATGATGGTGGGGAGAAAAATGTTACTTTCATTGATTTTCTTGGAG
TTGGATTAGTTTCTTAAGTTACACTCTCACAACTCAATGATTTTAAAGGG
TATCTATCATTAGGGTTAGGTATCATTTTCAGCCTTTTGCTTCCTTAAAA
CCTCATATGGATCTTCTATCAATTACAACTCTCATTTTCCGTCCATTTAT
ATCTA back to topCoding sequence (CDS) from alignment at A01_BnaDARv10:2182960..2184114+ >A01p04830.1_BnaDARv10-RA ID=A01p04830.1_BnaDARv10-RA|Name=A01p04830.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=756bp|location=Sequence derived from alignment at A01_BnaDARv10:2182960..2184114+ (Brassica napus)
ATGGACATGTCTAGGGGAAGCAACAGTTTTGACAATAAGAAAATCAGTTG
TCAGAGAGGTCACTGGAGACCTATTGAAGACGACCATCTCCGGCAACTCG
TGGAACAGTATGGGCCCAAGAACTGGAATTTCATTGCTCAACATCTTTGT
GGAAGATCAGGGAAAAGTTGTAGATTGAGATGGTACAATCAACTTGATCC
AAACATCACCAAGAAACCTTTCACTGAGGAAGAAGAAGAGAGACTTCTCA
AAGCTCATCGGATCCAGGGGAACCGTTGGGCCTCTATAGCAAGGCTATTT
CCAGGGAGGACCGATAACGCTGTCAAGAACCATTTTCATGTCATCATGGC
TAGACGCAAACGTGAAAGCTTATCTTCTACGTCTACTTCTACGTTCAACC
AAAGTTGGCATAATATATTGAGCCCTAGTTCTAGTCTTACAAGGCTTAAT
AGATCCTCCCAGTTTGGACTATGGAGGTATCAAAAGGATACAAGTCGTGG
TCACTGGCCTTACACTTTCGTTTCAGCACCAAGAGATGATCAGTTTGGAT
CTTCATCGATCTCGAATGTACGCAAAGAAGTTTATCCTGAGAGGAGAAAG
TTGAAAGAGTTGGTGGATGAACACAATAACGCATTTCACACAGCTACACC
AGATCAAAACAAGAACTCAGTTGAAGATGGACCATCCACGGGAGATGATG
GTGGGGAGAAAAATGTTACTTTCATTGATTTTCTTGGAGTTGGATTAGTT
TCTTAA back to top
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