Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1114 |
| Exons | 5 |
| Cds size | 1074 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p04200.1_BnaDARv10 | A01p04200.1_BnaDARv10 | Brassica napus | gene | A01_BnaDARv10 1944822..1946672 + |
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340473.7279575-five_prime_UTR-A01_BnaDARv10:1944821..1944861 | 1626340473.7279575-five_prime_UTR-A01_BnaDARv10:1944821..1944861 | Brassica napus | five_prime_UTR | A01_BnaDARv10 1944822..1944861 + |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p04200.1_BnaDARv10_exon1 | A01p04200.1_BnaDARv10_exon1 | Brassica napus | exon | A01_BnaDARv10 1944822..1944950 + |
| A01p04200.1_BnaDARv10_exon2 | A01p04200.1_BnaDARv10_exon2 | Brassica napus | exon | A01_BnaDARv10 1945038..1945151 + |
| A01p04200.1_BnaDARv10_exon3 | A01p04200.1_BnaDARv10_exon3 | Brassica napus | exon | A01_BnaDARv10 1945236..1945463 + |
| A01p04200.1_BnaDARv10_exon4 | A01p04200.1_BnaDARv10_exon4 | Brassica napus | exon | A01_BnaDARv10 1945930..1946373 + |
| A01p04200.1_BnaDARv10_exon5 | A01p04200.1_BnaDARv10_exon5 | Brassica napus | exon | A01_BnaDARv10 1946474..1946672 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340473.7372546-CDS-A01_BnaDARv10:1944861..1944950 | 1626340473.7372546-CDS-A01_BnaDARv10:1944861..1944950 | Brassica napus | CDS | A01_BnaDARv10 1944862..1944950 + |
| 1626340473.7451575-CDS-A01_BnaDARv10:1945037..1945151 | 1626340473.7451575-CDS-A01_BnaDARv10:1945037..1945151 | Brassica napus | CDS | A01_BnaDARv10 1945038..1945151 + |
| 1626340473.7524154-CDS-A01_BnaDARv10:1945235..1945463 | 1626340473.7524154-CDS-A01_BnaDARv10:1945235..1945463 | Brassica napus | CDS | A01_BnaDARv10 1945236..1945463 + |
| 1626340473.7601562-CDS-A01_BnaDARv10:1945929..1946373 | 1626340473.7601562-CDS-A01_BnaDARv10:1945929..1946373 | Brassica napus | CDS | A01_BnaDARv10 1945930..1946373 + |
| 1626340473.7675116-CDS-A01_BnaDARv10:1946473..1946672 | 1626340473.7675116-CDS-A01_BnaDARv10:1946473..1946672 | Brassica napus | CDS | A01_BnaDARv10 1946474..1946672 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >A01p04200.1_BnaDARv10-RA ID=A01p04200.1_BnaDARv10-RA|Name=A01p04200.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1114bp|location=Sequence derived from alignment at A01_BnaDARv10:1944822..1946672+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.
AAGACCAAGAAGCATTAGAAACAGAGAAAGATAATCAAGAATGGGGAGAA
TGGAGGTGGAGAGGAAAACAATAGGCTGGGCTGCGAGAGACCCATCTGGG
ATACTCTCTCCTTACACTTACACTCTCAGGGAGACAGGACCAGAGGATGT
ACACATAAGAATCATATGCTGTGGAATCTGCCACACCGATCTCCATCACA
CTAAAAACGATCTCGGCATGTCTAACTACCCCATGGTTCCTGGGCACGAG
GTTGTAGGGGAAGTAGTAGAGGTGGGATCAGGTGTGAGTAAGTTCACCGT
AGGGGATATAGTTGGAGTTGGTTGTCTCGTTGGATGTTGCGGTGGTTGTA
GCCCCTGCGAGAGGGATCTCGAACAGTATTGTCCCAAGAAAATATGGAGT
TACAACGATGTTTACATCGATGGTCAGCCTACACAAGGTGGCTTTGCTAA
AGCCACTGTGGTTCACCAAAAGTTTGTGGTGAAGATTCCAGAAGGAATGG
CGGTTGAGCAGGCAGCCCCGCTACTGTGCGCCGGTGTGACGGTGTACAGT
CCACTGAGCCACTTTGGGCTGAAGAAACCAGGTCTAAGGGGAGGCATACT
AGGGTTAGGTGGAGTTGGTCACATGGGTGTGAAATTCGCCAAAGCAATGG
GGCACCATGTGACTGTCATAAGCTCATCAAACAAGAAGAGAGAAGAGGCT
TTGCAAGATCTTGGAGCCGATGATTACGTGATCGGATCCGACCAGTCGAA
GATGAACGAACTTGCTGATTCAATGGATTACATAATAGACACGGTCCCTG
TTCATCATGCACTTGAGCCTTACTTGTCTCTGCTTAGGCTTGATGGGAAA
CTCATACTCATGGGAGTCATCAACAATCCGTTGCAGTTTCTCAGTCCTAT
GGTTATGATTGGTGAGAAAATGATAACTGGGAGCTTCATAGGGAGCATGA
AGGACACTGAGGAGATGCTTGAGTTCTGGAAAGAAAAGGGTTTAAGTTCT
ATCATCGAAGTTGTGAAAATGGACTATGTAAACACTGCGCTCGAGAGACT
CGAGAAGAACGATGTGCGTTATAGGTTCGTGGTTGATGTCGAAGGAAGCA
AACTCGAGGCTTGA back to topprotein sequence of A01p04200.1_BnaDARv10-RA >A01p04200.1_BnaDARv10-PA ID=A01p04200.1_BnaDARv10-PA|Name=A01p04200.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=358bp
MGRMEVERKTIGWAARDPSGILSPYTYTLRETGPEDVHIRIICCGICHTD
LHHTKNDLGMSNYPMVPGHEVVGEVVEVGSGVSKFTVGDIVGVGCLVGCC
GGCSPCERDLEQYCPKKIWSYNDVYIDGQPTQGGFAKATVVHQKFVVKIP
EGMAVEQAAPLLCAGVTVYSPLSHFGLKKPGLRGGILGLGGVGHMGVKFA
KAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQSKMNELADSMDYIID
TVPVHHALEPYLSLLRLDGKLILMGVINNPLQFLSPMVMIGEKMITGSFI
GSMKDTEEMLEFWKEKGLSSIIEVVKMDYVNTALERLEKNDVRYRFVVDV
EGSKLEA. back to topmRNA from alignment at A01_BnaDARv10:1944822..1946672+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >A01p04200.1_BnaDARv10-RA ID=A01p04200.1_BnaDARv10-RA|Name=A01p04200.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1851bp|location=Sequence derived from alignment at A01_BnaDARv10:1944822..1946672+ (Brassica napus)
AAGACCAAGAAGCATTAGAAACAGAGAAAGATAATCAAGAATGGGGAGAA
TGGAGGTGGAGAGGAAAACAATAGGCTGGGCTGCGAGAGACCCATCTGGG
ATACTCTCTCCTTACACTTACACTCTCAGGTTTATATTCTCTTCTTTTGA
TCTTTGAATCTTTATGTGTTATCAGTTTCATCATTTGGGTTTGAATTTGA
ACGTATATTCTTACAGGGAGACAGGACCAGAGGATGTACACATAAGAATC
ATATGCTGTGGAATCTGCCACACCGATCTCCATCACACTAAAAACGATCT
CGGCATGTCTAACTACCCCATGGTTCCTGGGTATTTCTTCTTCTTTCTTC
TCCTTAGATATATAGCCAAATAAATATATAATAGAATCTTAAAACTCATG
TTGATGCTCTCTAGGCACGAGGTTGTAGGGGAAGTAGTAGAGGTGGGATC
AGGTGTGAGTAAGTTCACCGTAGGGGATATAGTTGGAGTTGGTTGTCTCG
TTGGATGTTGCGGTGGTTGTAGCCCCTGCGAGAGGGATCTCGAACAGTAT
TGTCCCAAGAAAATATGGAGTTACAACGATGTTTACATCGATGGTCAGCC
TACACAAGGTGGCTTTGCTAAAGCCACTGTGGTTCACCAAAAGTAAACTT
ATTTCCTTCAAAAAGAACTTTATGATATTCTCCATACTACATAACTAATG
ATCTTTAATATAGGTTTTGTTAGATTTTTGGTAATTGCTTTTGATTGTTC
AAACTGAAATCAAATTTTTTTTATGGTTTTCTATACTACAGAACTCATGA
TCTTTAGTCTTGGTTTTCATATACAGTCTAGTAATAAAGATTTTTAAAAA
TAATTAATAAATGTTTTGTTTAAAATACAAACGAAGGTCTTCCAAATTAA
AACTAATTGGCTGTAAATGGATTGATCCAAGTCACTTATTTATATATATA
TATATATTTATAATGTGTGATATCTCCAGCATACTCTATGCGTATGAACT
TGAATATTTTTAAATAACAAACGATTTTCAAACAGGATCTTTAGTTTTTG
GTTTCTTGTGCAACAACTTAGGGTATGTATGGCTAAAGGTTGGTCTAATT
GTGTTCAGGTTTGTGGTGAAGATTCCAGAAGGAATGGCGGTTGAGCAGGC
AGCCCCGCTACTGTGCGCCGGTGTGACGGTGTACAGTCCACTGAGCCACT
TTGGGCTGAAGAAACCAGGTCTAAGGGGAGGCATACTAGGGTTAGGTGGA
GTTGGTCACATGGGTGTGAAATTCGCCAAAGCAATGGGGCACCATGTGAC
TGTCATAAGCTCATCAAACAAGAAGAGAGAAGAGGCTTTGCAAGATCTTG
GAGCCGATGATTACGTGATCGGATCCGACCAGTCGAAGATGAACGAACTT
GCTGATTCAATGGATTACATAATAGACACGGTCCCTGTTCATCATGCACT
TGAGCCTTACTTGTCTCTGCTTAGGCTTGATGGGAAACTCATACTCATGG
GAGTCATCAACAATCCGTTGCAGTTTCTCAGTCCTATGGTTATGATTGGT
GAGTCAATGATAAAAAAAACATTAATTAGTTGAATCATCATTAATGGTTG
TGATATTAGAGGAATATTAATTTGGGGTATGATGATGATTTTAATTAGGG
AGGAAAATGATAACTGGGAGCTTCATAGGGAGCATGAAGGACACTGAGGA
GATGCTTGAGTTCTGGAAAGAAAAGGGTTTAAGTTCTATCATCGAAGTTG
TGAAAATGGACTATGTAAACACTGCGCTCGAGAGACTCGAGAAGAACGAT
GTGCGTTATAGGTTCGTGGTTGATGTCGAAGGAAGCAAACTCGAGGCTTG
A back to topCoding sequence (CDS) from alignment at A01_BnaDARv10:1944822..1946672+ >A01p04200.1_BnaDARv10-RA ID=A01p04200.1_BnaDARv10-RA|Name=A01p04200.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1074bp|location=Sequence derived from alignment at A01_BnaDARv10:1944822..1946672+ (Brassica napus)
ATGGGGAGAATGGAGGTGGAGAGGAAAACAATAGGCTGGGCTGCGAGAGA
CCCATCTGGGATACTCTCTCCTTACACTTACACTCTCAGGGAGACAGGAC
CAGAGGATGTACACATAAGAATCATATGCTGTGGAATCTGCCACACCGAT
CTCCATCACACTAAAAACGATCTCGGCATGTCTAACTACCCCATGGTTCC
TGGGCACGAGGTTGTAGGGGAAGTAGTAGAGGTGGGATCAGGTGTGAGTA
AGTTCACCGTAGGGGATATAGTTGGAGTTGGTTGTCTCGTTGGATGTTGC
GGTGGTTGTAGCCCCTGCGAGAGGGATCTCGAACAGTATTGTCCCAAGAA
AATATGGAGTTACAACGATGTTTACATCGATGGTCAGCCTACACAAGGTG
GCTTTGCTAAAGCCACTGTGGTTCACCAAAAGTTTGTGGTGAAGATTCCA
GAAGGAATGGCGGTTGAGCAGGCAGCCCCGCTACTGTGCGCCGGTGTGAC
GGTGTACAGTCCACTGAGCCACTTTGGGCTGAAGAAACCAGGTCTAAGGG
GAGGCATACTAGGGTTAGGTGGAGTTGGTCACATGGGTGTGAAATTCGCC
AAAGCAATGGGGCACCATGTGACTGTCATAAGCTCATCAAACAAGAAGAG
AGAAGAGGCTTTGCAAGATCTTGGAGCCGATGATTACGTGATCGGATCCG
ACCAGTCGAAGATGAACGAACTTGCTGATTCAATGGATTACATAATAGAC
ACGGTCCCTGTTCATCATGCACTTGAGCCTTACTTGTCTCTGCTTAGGCT
TGATGGGAAACTCATACTCATGGGAGTCATCAACAATCCGTTGCAGTTTC
TCAGTCCTATGGTTATGATTGGTGAGAAAATGATAACTGGGAGCTTCATA
GGGAGCATGAAGGACACTGAGGAGATGCTTGAGTTCTGGAAAGAAAAGGG
TTTAAGTTCTATCATCGAAGTTGTGAAAATGGACTATGTAAACACTGCGC
TCGAGAGACTCGAGAAGAACGATGTGCGTTATAGGTTCGTGGTTGATGTC
GAAGGAAGCAAACTCGAGGCTTGA back to top
|