https://bbip.genouest.org/index.php?action=history&feed=atom&title=PEPCARBOX-RXN 2026-04-17T01:33:47Z Revision history for this page on the wiki MediaWiki 1.28.1 https://bbip.genouest.org/sp/brassica_napus/aureme/index.php?title=PEPCARBOX-RXN&diff=33329&oldid=prev 2020-10-09T11:03:17Z

<p>Created page with &quot;<a href="/sp/brassica_napus/aureme/index.php/Category:Reaction" title="Category:Reaction">Category:reaction</a> == Reaction PEPCARBOX-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.31 ec-4.1.1.31] * direction: ** left-to-right * common-name: ** nil == Re...&quot;</p> <p><b>New page</b></p><div>[[Category:reaction]]<br /> == Reaction PEPCARBOX-RXN ==<br /> * ec-number:<br /> ** [http://enzyme.expasy.org/EC/4.1.1.31 ec-4.1.1.31]<br /> * direction:<br /> ** left-to-right<br /> * common-name:<br /> ** nil<br /> == Reaction formula ==<br /> * 1 [[HCO3]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''=&gt;''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[Pi]][c]<br /> == Gene(s) associated with this reaction ==<br /> &lt;div class=&quot;toccolours mw-collapsible mw-collapsed&quot; style=&quot;width:100%; overflow:auto;&quot;&gt;<br /> * Gene: [[BnaC05g20500D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaC01g36480D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaC01g36470D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaC01g36490D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaA03g33640D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaCnng15980D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaC09g01540D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaA05g24610D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaC04g02430D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaA05g34260D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaC04g48440D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaC03g69540D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaC03g53310D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaC03g38810D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaC06g02620D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaA09g28740D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaC09g00620D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaC06g09980D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaC05g38590D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaCnng20540D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaA04g24600D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaA07g24440D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaCnng24040D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaC06g25590D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaA08g01200D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> * Gene: [[BnaC05g27440D]]<br /> ** Category: [[annotation]]<br /> *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br /> &lt;/div&gt;<br /> == Pathway(s) ==<br /> &lt;div class=&quot;toccolours mw-collapsible mw-collapsed&quot; style=&quot;width:100%; overflow:auto;&quot;&gt;<br /> * [[P23-PWY]], reductive TCA cycle I:<br /> ** '''8''' reactions found over '''12''' reactions in the full pathway<br /> * [[PWYQT-4429]], CO2 fixation into oxaloacetate (anaplerotic):<br /> ** '''2''' reactions found over '''2''' reactions in the full pathway<br /> * [[PWY-5913]], partial TCA cycle (obligate autotrophs):<br /> ** '''7''' reactions found over '''8''' reactions in the full pathway<br /> * [[PWY-1622]], formaldehyde assimilation I (serine pathway):<br /> ** '''9''' reactions found over '''13''' reactions in the full pathway<br /> * [[PWY-6146]], Methanobacterium thermoautotrophicum biosynthetic metabolism:<br /> ** '''8''' reactions found over '''2''' reactions in the full pathway<br /> * [[PWY-6549]], L-glutamine biosynthesis III:<br /> ** '''9''' reactions found over '''9''' reactions in the full pathway<br /> * [[PWY-7124]], ethene biosynthesis V (engineered):<br /> ** '''8''' reactions found over '''8''' reactions in the full pathway<br /> * [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):<br /> ** '''9''' reactions found over '''13''' reactions in the full pathway<br /> * [[FERMENTATION-PWY]], mixed acid fermentation:<br /> ** '''10''' reactions found over '''16''' reactions in the full pathway<br /> * [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type:<br /> ** '''5''' reactions found over '''6''' reactions in the full pathway<br /> * [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:<br /> ** '''9''' reactions found over '''10''' reactions in the full pathway<br /> * [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:<br /> ** '''10''' reactions found over '''12''' reactions in the full pathway<br /> &lt;/div&gt;<br /> == Reconstruction information ==<br /> * category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a<br /> == External links ==<br /> &lt;div class=&quot;toccolours mw-collapsible mw-collapsed&quot; style=&quot;width:100%; overflow:auto;&quot;&gt;<br /> * METANETX-RXN : MNXR116110<br /> * LIGAND-RXN:<br /> ** [http://www.genome.jp/dbget-bin/www_bget?R00345 R00345]<br /> * UNIPROT:<br /> ** [http://www.uniprot.org/uniprot/P28594 P28594]<br /> ** [http://www.uniprot.org/uniprot/P43920 P43920]<br /> ** [http://www.uniprot.org/uniprot/P29195 P29195]<br /> ** [http://www.uniprot.org/uniprot/P51059 P51059]<br /> ** [http://www.uniprot.org/uniprot/P00864 P00864]<br /> ** [http://www.uniprot.org/uniprot/P12880 P12880]<br /> ** [http://www.uniprot.org/uniprot/P10490 P10490]<br /> ** [http://www.uniprot.org/uniprot/P16097 P16097]<br /> ** [http://www.uniprot.org/uniprot/P27154 P27154]<br /> ** [http://www.uniprot.org/uniprot/P06516 P06516]<br /> ** [http://www.uniprot.org/uniprot/Q43267 Q43267]<br /> ** [http://www.uniprot.org/uniprot/Q41197 Q41197]<br /> ** [http://www.uniprot.org/uniprot/P29194 P29194]<br /> ** [http://www.uniprot.org/uniprot/P30694 P30694]<br /> ** [http://www.uniprot.org/uniprot/P15804 P15804]<br /> ** [http://www.uniprot.org/uniprot/Q43268 Q43268]<br /> ** [http://www.uniprot.org/uniprot/Q01647 Q01647]<br /> ** [http://www.uniprot.org/uniprot/Q01648 Q01648]<br /> ** [http://www.uniprot.org/uniprot/Q02735 Q02735]<br /> ** [http://www.uniprot.org/uniprot/Q02909 Q02909]<br /> ** [http://www.uniprot.org/uniprot/Q42730 Q42730]<br /> ** [http://www.uniprot.org/uniprot/Q41198 Q41198]<br /> ** [http://www.uniprot.org/uniprot/P51063 P51063]<br /> ** [http://www.uniprot.org/uniprot/Q40103 Q40103]<br /> ** [http://www.uniprot.org/uniprot/Q40104 Q40104]<br /> ** [http://www.uniprot.org/uniprot/Q40105 Q40105]<br /> ** [http://www.uniprot.org/uniprot/Q40102 Q40102]<br /> ** [http://www.uniprot.org/uniprot/Q41836 Q41836]<br /> ** [http://www.uniprot.org/uniprot/O22118 O22118]<br /> ** [http://www.uniprot.org/uniprot/O22119 O22119]<br /> ** [http://www.uniprot.org/uniprot/O48623 O48623]<br /> ** [http://www.uniprot.org/uniprot/Q42634 Q42634]<br /> ** [http://www.uniprot.org/uniprot/O23946 O23946]<br /> ** [http://www.uniprot.org/uniprot/O23947 O23947]<br /> ** [http://www.uniprot.org/uniprot/Q84VW9 Q84VW9]<br /> &lt;/div&gt;<br /> {{#set: ec-number=ec-4.1.1.31}}<br /> {{#set: direction=left-to-right}}<br /> {{#set: common-name=nil}}<br /> {{#set: nb gene associated=26}}<br /> {{#set: nb pathway associated=12}}<br /> {{#set: reconstruction category=annotation}}<br /> {{#set: reconstruction tool=pathwaytools}}<br /> {{#set: reconstruction comment=n.a}}<br /> {{#set: reconstruction source=genome}}</div>

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