Admin: Created page with "Category:reaction == Reaction CITSYN-RXN == * ec-number: [http://enzyme.expasy.org/EC/2.3.3.16 ec-2.3.3.16] [http://enzyme.expasy.org/EC/2.3.3.1 ec-2.3.3.1] * direct..."

2020-10-09T10:59:36Z

Created page with "Category:reaction == Reaction CITSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.3.16 ec-2.3.3.16] ** [http://enzyme.expasy.org/EC/2.3.3.1 ec-2.3.3.1] * direct..."

New page

[[Category:reaction]]
== Reaction CITSYN-RXN ==
* ec-number:
** [http://enzyme.expasy.org/EC/2.3.3.16 ec-2.3.3.16]
** [http://enzyme.expasy.org/EC/2.3.3.1 ec-2.3.3.1]
* direction:
** left-to-right
* common-name:
** nil
* synonymous:
** citrate synthesis
** condensing enzyme
== Reaction formula ==
* 1 [[ACETYL-COA]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CIT]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c]
== Gene(s) associated with this reaction ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
* Gene: [[BnaC08g29460D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaC08g29480D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaC08g29490D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaA03g20770D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaC04g49560D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaA05g03050D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaA05g03080D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaC04g22440D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaA05g35370D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaC04g23380D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaC04g52580D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaA07g08220D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaC03g24820D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaA07g18040D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaA09g55290D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaA09g55310D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaA09g55280D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaA04g25660D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaAnng15280D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaA04g01830D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaA04g01840D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaA04g01390D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaC06g16900D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[BnaA05g03040D]]
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
</div>
== Pathway(s) ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
* [[TCA]], TCA cycle I (prokaryotic):
** '''8''' reactions found over '''10''' reactions in the full pathway
* [[PWY-7254]], TCA cycle VII (acetate-producers):
** '''6''' reactions found over '''9''' reactions in the full pathway
* [[PWY-5690]], TCA cycle II (plants and fungi):
** '''8''' reactions found over '''9''' reactions in the full pathway
* [[PWY66-398]], TCA cycle III (animals):
** '''9''' reactions found over '''10''' reactions in the full pathway
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
** '''7''' reactions found over '''8''' reactions in the full pathway
* [[REDCITCYC]], TCA cycle VI (Helicobacter):
** '''5''' reactions found over '''9''' reactions in the full pathway
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
** '''10''' reactions found over '''12''' reactions in the full pathway
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
** '''9''' reactions found over '''11''' reactions in the full pathway
* [[PWY-6549]], L-glutamine biosynthesis III:
** '''9''' reactions found over '''9''' reactions in the full pathway
* [[PWY-7124]], ethene biosynthesis V (engineered):
** '''8''' reactions found over '''8''' reactions in the full pathway
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
** '''6''' reactions found over '''6''' reactions in the full pathway
* [[PWY-6728]], methylaspartate cycle:
** '''10''' reactions found over '''19''' reactions in the full pathway
* [[FERMENTATION-PWY]], mixed acid fermentation:
** '''10''' reactions found over '''16''' reactions in the full pathway
</div>
== Reconstruction information ==
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
== External links ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R00351 R00351]
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16846 16846]
* PIR:
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43936 A43936]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81200 A81200]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B81139 B81139]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64760 E64760]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86708 F86708]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69600 G69600]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81265 G81265]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I39506 I39506]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40044 I40044]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40380 I40380]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40717 I40717]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JQ1392 JQ1392]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PQ0046 PQ0046]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41527 S41527]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41563 S41563]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S42370 S42370]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44316 S44316]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52814 S52814]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02390 T02390]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09334 T09334]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44615 T44615]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKBY YKBY]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKBYC YKBYC]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKEC YKEC]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKMUM YKMUM]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKMY YKMY]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKPG YKPG]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKPSCA YKPSCA]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKQPC YKQPC]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKRECP YKRECP]
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKYT YKYT]
* UNIPROT:
** [http://www.uniprot.org/uniprot/Q9JRA5 Q9JRA5]
** [http://www.uniprot.org/uniprot/Q9JQX0 Q9JQX0]
** [http://www.uniprot.org/uniprot/P31660 P31660]
** [http://www.uniprot.org/uniprot/Q9CHQ6 Q9CHQ6]
** [http://www.uniprot.org/uniprot/P39120 P39120]
** [http://www.uniprot.org/uniprot/Q9PLZ5 Q9PLZ5]
** [http://www.uniprot.org/uniprot/P20902 P20902]
** [http://www.uniprot.org/uniprot/P51033 P51033]
** [http://www.uniprot.org/uniprot/P39119 P39119]
** [http://www.uniprot.org/uniprot/P42457 P42457]
** [http://www.uniprot.org/uniprot/P18789 P18789]
** [http://www.uniprot.org/uniprot/P20903 P20903]
** [http://www.uniprot.org/uniprot/P51038 P51038]
** [http://www.uniprot.org/uniprot/P34085 P34085]
** [http://www.uniprot.org/uniprot/P34575 P34575]
** [http://www.uniprot.org/uniprot/Q43175 Q43175]
** [http://www.uniprot.org/uniprot/P43635 P43635]
** [http://www.uniprot.org/uniprot/O24259 O24259]
** [http://www.uniprot.org/uniprot/O32705 O32705]
** [http://www.uniprot.org/uniprot/P00890 P00890]
** [http://www.uniprot.org/uniprot/P08679 P08679]
** [http://www.uniprot.org/uniprot/P0ABH7 P0ABH7]
** [http://www.uniprot.org/uniprot/Q47237 Q47237]
** [http://www.uniprot.org/uniprot/P20115 P20115]
** [http://www.uniprot.org/uniprot/P26491 P26491]
** [http://www.uniprot.org/uniprot/P00889 P00889]
** [http://www.uniprot.org/uniprot/P20901 P20901]
** [http://www.uniprot.org/uniprot/P09948 P09948]
** [http://www.uniprot.org/uniprot/P21553 P21553]
</div>
{{#set: ec-number=ec-2.3.3.16|ec-2.3.3.1}}
{{#set: direction=left-to-right}}
{{#set: common-name=nil}}
{{#set: synonymous=condensing enzyme|citrate synthesis}}
{{#set: nb gene associated=24}}
{{#set: nb pathway associated=13}}
{{#set: reconstruction category=annotation}}
{{#set: reconstruction tool=pathwaytools}}
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=genome}}

CITSYN-RXN - Revision history

Admin: Created page with "Category:reaction == Reaction CITSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.3.16 ec-2.3.3.16] ** [http://enzyme.expasy.org/EC/2.3.3.1 ec-2.3.3.1] * direct..."

Admin: Created page with "Category:reaction == Reaction CITSYN-RXN == * ec-number: [http://enzyme.expasy.org/EC/2.3.3.16 ec-2.3.3.16] [http://enzyme.expasy.org/EC/2.3.3.1 ec-2.3.3.1] * direct..."